Updating logging

[astjoephysics]

Fixes # .

Describe your changes.

Update all instances of old logging (where possible) to now use the inbuilt sorchaArguments object. All functionality remains the same as prior.

Review Checklist for Source Code Changes

• Does pip install still work?
• Have you written a unit test for any new functions?
• Do all the units tests run successfully?
• Does Sorcha run successfully on a test set of input files/databases?
• Have you used black on the files you have updated to confirm python programming style guide enforcement?

[mschwamb]

#766 replace this