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circtools 1.2.0 released
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@tjakobi tjakobi released this 17 Aug 11:20
· 14 commits to master since this release
v1.2.0
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tjakobi Tobias Jakobi
GPG key ID: 4E323A70437A7DFA
Learn about vigilant mode.
378b2e4
This commit was signed with the committer’s verified signature.
tjakobi Tobias Jakobi
GPG key ID: 4E323A70437A7DFA
Learn about vigilant mode.

We are proud to release a new major version of circtools, 1.2.0 as of today.

Highlights

  • 1.2.0 features the new siRNA design module that allows to design siRNAs that can be used to knock-down specific circRNAs
  • circtools 1.2.0 requires Python >= 3.6 (due to Biopython)
  • Both, DCC and FUCHS have been ported to Python 3.5 and will not work with Python 2.x anymore.

Fixes

  • 1.2.0 contains general bugfixes
  • Fix broken pysam dependency of HTseq for DCC #58
  • Adding python package reportlab to dependency list
  • Updated install procedure
  • Fixing Read the Docs build error
  • Fixing failing Travis tests
  • Primex crashes when product length > circRNA length #75
  • primex script no validates input parameters for the PCR product size
  • Adding -n flag for specifying the number of primer pairs (default: 10)
  • Implementing curl macOS fix for #77
  • circtools installation sets wrong R library folder in .Renviron #78
  • Error using R version 3.6 #76
  • Updating bedtools version to 2.29.2
  • Updating R dependencies
  • Adding sus scrofa support for primex
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