initial working jupyter with R

.gitignore

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+.DS_Store
+data

Dockerfile

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+ARG BASE_CONTAINER=jupyter/minimal-notebook
+FROM $BASE_CONTAINER
+
+LABEL maintainer="David Blodgett <[email protected]>"
+
+USER root
+
+# Stole this from R travis
+RUN apt-get update && \
+	apt-get -y install software-properties-common && \
+	add-apt-repository -y "ppa:marutter/rrutter3.5" && \
+	add-apt-repository -y "ppa:marutter/c2d4u3.5" && \
+	add-apt-repository -y "ppa:ubuntugis/ubuntugis-unstable" && \
+	apt-get update && \
+	apt-get install -y --no-install-recommends build-essential gcc g++ libblas-dev liblapack-dev libncurses5-dev libreadline-dev libjpeg-dev libpcre3-dev libpng-dev zlib1g-dev libbz2-dev liblzma-dev libicu-dev cdbs qpdf texinfo libssh2-1-dev gfortran libproj-dev libgeos-dev libgdal-dev r-base-core libudunits2-dev libssl-dev libgit2-dev
+
+# Install additional R packages.
+RUN Rscript -e 'install.packages(c("dataRetrieval", "sf", "RNetCDF", "tidyverse", "devtools", "rmarkdown", "IRkernel"), repos = "https://cloud.r-project.org")'
+
+USER $NB_UID
+
+RUN Rscript -e 'IRkernel::installspec()'

docker-compose.yml

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+version: '3'
+
+services:
+  docker_jupytr_training:
+    build: .
+    container_name: docker_jupyter_training
+    ports:
+      - "8888:8888"
+    volumes:
+      - ./workspace:/home/jovyan/work

workspace/README.md

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+This is where you scripts and data live.