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CBroz1 committed Feb 22, 2023
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1 change: 0 additions & 1 deletion CODE_OF_CONDUCT.md
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# Contributor Covenant Code of Conduct

## Our Pledge
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4 changes: 3 additions & 1 deletion CONTRIBUTING.md
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# Contribution Guidelines

This project follows the [DataJoint Contribution Guidelines](https://docs.datajoint.io/python/community/02-Contribute.html). Please reference the link for more full details.
This project follows the
[DataJoint Contribution Guidelines](https://datajoint.com/docs/community/contribute/).
Please reference the link for more full details.
20 changes: 11 additions & 9 deletions README.md
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Expand Up @@ -16,15 +16,17 @@ A complete calcium imaging workflow can be built using the DataJoint Elements.
This repository provides demonstrations for:

1. Set up a workflow using DataJoint Elements (see
[workflow_calcium_imaging/pipeline.py](workflow_calcium_imaging/pipeline.py))
[workflow_calcium_imaging/pipeline.py](workflow_calcium_imaging/pipeline.py))
2. Ingestion of data/metadata based on a predefined file structure, file naming
convention, and directory lookup methods (see
[workflow_calcium_imaging/paths.py](workflow_calcium_imaging/paths.py)).
convention, and directory lookup methods (see
[workflow_calcium_imaging/paths.py](workflow_calcium_imaging/paths.py)).
3. Ingestion of segmentation and deconvolution results.

See the [Element Calcium Imaging documentation](https://elements.datajoint.org/description/calcium_imaging/) for the background information and development timeline.

For more information on the DataJoint Elements project, please visit <https://elements.datajoint.org>. This work is supported by the National Institutes of Health.
For more information on the DataJoint Elements project, please visit
<https://elements.datajoint.org>. This work is supported by the National Institutes of
Health.

## Workflow architecture

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## Installation instructions

+ The installation instructions can be found at the
[DataJoint Elements documentation](https://elements.datajoint.org/usage/install/).
[DataJoint Elements documentation](https://elements.datajoint.org/usage/install/).

## Interacting with the DataJoint workflow

+ Please refer to the following workflow-specific
[Jupyter notebooks](/notebooks) for an in-depth explanation of how to run the
workflow ([03-process.ipynb](notebooks/03-process.ipynb)) and explore the data
([05-explore.ipynb](notebooks/05-explore.ipynb)).
+ Please refer to the following workflow-specific [Jupyter notebooks](/notebooks) for an
in-depth explanation of how to run the workflow
([03-process.ipynb](notebooks/03-process.ipynb)) and explore the data
([05-explore.ipynb](notebooks/05-explore.ipynb)).

+ See our YouTube tutorial for a walkthrough of the schemas and functions:

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