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Fix analytical covariates (Sage-Bionetworks#850)
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* alphabetize

* remove analytical covariates

Should have been added to metadataType, not resourceType.

* add analytical covariates value

* remove extra tab

* Update terms/experimentalData/metadataType.json

Co-authored-by: Nicole Kauer <[email protected]>

* remove duplicate, properly alphabetize

Co-authored-by: Nicole Kauer <[email protected]>
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avanlinden and Aryllen authored Jul 30, 2021
1 parent 6127823 commit ab66d5d
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Showing 2 changed files with 13 additions and 14 deletions.
20 changes: 12 additions & 8 deletions terms/experimentalData/metadataType.json
Original file line number Diff line number Diff line change
@@ -1,28 +1,33 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"$id": "sage.annotations-experimentalData.metadataType-0.0.1",
"$id": "sage.annotations-experimentalData.metadataType-0.0.2",
"description": "For files of dataSubtype: metadata, a description of the type of metadata in the file.",
"anyOf": [
{
"const": "individual",
"description": "Metadata describing properties of individuals (human or animal) represented in the study.",
"const": "analytical covariates",
"description": "A file that contains a combination or subset of individual- or specimen-level covariates used for a particular analysis.",
"source": "Sage Bionetworks"
},
{
"const": "biospecimen",
"description": "Metadata describing properties of specimens collected and/or analyzed in the study.",
"const": "assay",
"description": "Metadata describing properites of an assay conducted in the study.",
"source": "Sage Bionetworks"
},
{
"const": "assay",
"description": "Metadata describing properites of an assay conducted in the study.",
"const": "biospecimen",
"description": "Metadata describing properties of specimens collected and/or analyzed in the study.",
"source": "Sage Bionetworks"
},
{
"const": "data dictionary",
"description": "Metadata describing terms or variables that appear in another file.",
"source": "Sage Bionetworks"
},
{
"const": "individual",
"description": "Metadata describing properties of individuals (human or animal) represented in the study.",
"source": "Sage Bionetworks"
},
{
"const": "manifest",
"description": "Metadata describing a list of files and the annotations terms associated with them.",
Expand All @@ -35,4 +40,3 @@
}
]
}

7 changes: 1 addition & 6 deletions terms/sageCommunity/resourceType.json
Original file line number Diff line number Diff line change
@@ -1,18 +1,13 @@
{
"$schema": "http://json-schema.org/draft-07/schema#",
"$id": "sage.annotations-sageCommunity.resourceType-0.0.3",
"$id": "sage.annotations-sageCommunity.resourceType-0.0.4",
"description": "The type of resource being stored and annotated",
"anyOf": [
{
"const": "analysis",
"description": "Any file derived from analysis such that the analysis annotations might apply, possibly disease-related",
"source": "Sage Bionetworks"
},
{
"const": "analytical covariates",
"description": "A file that contains a combination or subset of individual- or specimen-level covariates used for a particular analysis.",
"source": "Sage Bionetworks"
},
{
"const": "curatedData",
"description": "Any file derived from or pertaining a manually or programatically curated data resource. Examples include: reference sequences, drug information databases, identifier maps",
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