hotfix: Add skip_preprocess flag to schema

Signed-off-by: jvfe <[email protected]>
dalmolingroup · Mar 31, 2024 · f651578 · f651578
1 parent 7d8e5da
commit f651578
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diff --git a/docs/params.md b/docs/params.md
@@ -25,6 +25,7 @@ Choose to skip pipeline steps
 | `skip_functional` | Skip functional annotation | `boolean` |  |  |  |
 | `skip_host_removal` | Skip host removal | `boolean` |  |  |  |
 | `skip_microview` | Skip MicroView report | `boolean` |  |  |  |
+| `skip_preprocess` | Skip Preprocessing steps | `boolean` |  |  |  |
 
 ## Decontamination
 

diff --git a/nextflow.config b/nextflow.config
@@ -43,6 +43,7 @@ params {
     maximum_evalue             = 0.0001
 
     // Skips
+    skip_preprocess            = false
     skip_host_removal          = false
     skip_classification        = false
     skip_functional            = false

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -79,6 +79,11 @@
                     "type": "boolean",
                     "fa_icon": "fas fa-glasses",
                     "description": "Skip MicroView report"
+                },
+                "skip_preprocess": {
+                    "type": "boolean",
+                    "description": "Skip Preprocessing steps",
+                    "fa_icon": "fas fa-cut"
                 }
             },
             "fa_icon": "fas fa-angle-double-right"