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underscore bug #25

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merged 2 commits into from
Dec 12, 2024
Merged

underscore bug #25

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33fbb2b
underscore bug
strasserle Dec 12, 2024
e8c6c0b
underscore bug models
strasserle Dec 12, 2024
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8 changes: 4 additions & 4 deletions app/models.py
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Original file line number Diff line number Diff line change
Expand Up @@ -322,9 +322,9 @@ class TranscriptInteraction(db.Model):
sponge_run = relationship("SpongeRun", foreign_keys=[sponge_run_ID])

transcript_ID_1 = db.Column(db.Integer, db.ForeignKey('transcript.transcript_ID'), nullable=False)
transcript1 = relationship("Transcript", foreign_keys=[transcript_ID_1])
transcript_1 = relationship("Transcript", foreign_keys=[transcript_ID_1])
transcript_ID_2 = db.Column(db.Integer, db.ForeignKey('transcript.transcript_ID'), nullable=False)
transcript2 = relationship("Transcript", foreign_keys=[transcript_ID_2])
transcript_2 = relationship("Transcript", foreign_keys=[transcript_ID_2])

p_value = db.Column(db.Float)
mscor = db.Column(db.Float)
Expand Down Expand Up @@ -948,8 +948,8 @@ class Meta:
fields = ["correlation", "mscor", "p_value", "sponge_run", "transcript_1", "transcript_2"]

sponge_run = ma.Nested(lambda: SpongeRunSchema(only=("sponge_run_ID", "dataset")))
transcript1 = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))
transcript2 = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))
transcript_1 = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))
transcript_2 = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))

class GeneEnrichmentScoreSchema(ma.SQLAlchemyAutoSchema):
class Meta:
Expand Down
12 changes: 6 additions & 6 deletions swagger.yml
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Expand Up @@ -811,7 +811,7 @@ paths:
correlation:
type: number
description: Correlation of the corresponding ceRNA interaction.
transcript1:
transcript_1:
type: object
description: One of the two interacting ceRNAs.
properties:
Expand Down Expand Up @@ -843,7 +843,7 @@ paths:
canonical_transcript:
type: integer
description: Is a canonical transcript
transcript2:
transcript_2:
type: object
description: The other part of the ceRNA interaction.
properties:
Expand Down Expand Up @@ -1101,7 +1101,7 @@ paths:
correlation:
type: number
description: Correlation of the corresponding ceRNA interaction.
transcript1:
transcript_1:
type: object
description: One of the two interacting ceRNAs.
properties:
Expand Down Expand Up @@ -1133,7 +1133,7 @@ paths:
canonical_transcript:
type: integer
description: Is a canonical transcript
transcript2:
transcript_2:
type: object
description: The other part of the ceRNA interaction.
properties:
Expand Down Expand Up @@ -1984,7 +1984,7 @@ paths:
correlation:
type: number
description: Correlation of the corresponding ceRNA interaction.
transcript1:
transcript_1:
type: object
description: transcript of the first part of the ceRNA interaction.
properties:
Expand All @@ -2001,7 +2001,7 @@ paths:
gene_symbol:
type: string
description: Symbol of the gene that the transcript is part of
transcript2:
transcript_2:
type: object
description: transcript of the second part of the ceRNA interaction.
properties:
Expand Down
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