Merge pull request #11 from daisybio/container_fix

Update docker image

Dockerfile

@@ -1,7 +1,12 @@
-from alpine:3.11.6
+FROM python:3.12.6-bullseye
 
-RUN apk add --no-cache python3-dev mariadb-connector-c-dev build-base linux-headers\
-    && pip3 install --upgrade pip
+# Install required packages using apt
+RUN apt-get update && apt-get install -y \
+    libmariadb3 libmariadb-dev build-essential linux-headers-amd64 \
+    && rm -rf /var/lib/apt/lists/*
+
+# Upgrade pip
+RUN pip3 install --upgrade pip
 
 WORKDIR /server
 COPY . /server

requirements.txt

@@ -1,32 +1,32 @@
-certifi==2019.6.16
-chardet==3.0.4
-Click==7.0
-clickclick==1.2.2
-connexion~=2.3.0
-Flask~=1.1.1
-flask-marshmallow==0.10.1
-Flask-SQLAlchemy==2.4.0
-Flask-Cors==3.0.8
-idna==2.8
-inflection==0.3.1
-itsdangerous==1.1.0
-Jinja2==2.10.1
-jsonschema==2.6.0
-MarkupSafe==1.1.1
-marshmallow~=2.19.5
-marshmallow-sqlalchemy==0.17.0
-mysqlclient==1.4.2.post1
-openapi-spec-validator==0.2.8
-PyYAML==5.1.2
-requests==2.22.0
-six==1.12.0
-SQLAlchemy~=1.3.6
-swagger-ui-bundle==0.0.5
-urllib3==1.25.3
-Werkzeug~=0.15.5
-gseapy==1.0.6
-matplotlib==3.7.2
-numpy==1.24.4
-pandas==2.0.3
-scikit-learn==1.3.1
-scipy==1.10.1
+certifi==2024.8.30
+chardet==5.2.0
+click==8.1.3
+clickclick==1.2.2
+connexion==3.1.0
+flask-cors==4.0.0
+flask-marshmallow==1.2.1
+flask-sqlalchemy==3.1.1
+flask==3.0.3
+idna==3.10
+inflection==0.5.1
+itsdangerous==2.2.0
+jinja2==3.1.4
+jsonschema==4.23.0
+markupsafe==2.1.5
+marshmallow-sqlalchemy==1.0.0
+marshmallow==3.22.0
+matplotlib==3.9.2
+mysqlclient==2.2.4
+numpy==2.1.1
+openapi-spec-validator==0.7.1
+pandas==2.2.3
+pyyaml==6.0.2
+requests==2.32.3
+scikit-learn==1.5.2
+scipy==1.14.1
+six==1.16.0
+sqlalchemy==2.0.35
+swagger-ui-bundle==1.1.0
+urllib3==2.2.3
+uwsgi==2.0.23
+werkzeug==3.0.4