rerun module

d3b-center · May 8, 2024 · 3cd15d4 · 3cd15d4
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diff --git a/analyses/survival/01-prepare-survival.nb.html b/analyses/survival/01-prepare-survival.nb.html
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diff --git a/analyses/survival/plots/CPT/forest_CPT_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/CPT/forest_CPT_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/GERM/forest_GERM_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/GERM/forest_GERM_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/GNG/forest_GNG_BRAF-V600E_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/GNG/forest_GNG_BRAF-V600E_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/GNG/forest_GNG_Other-alteration_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/GNG/forest_GNG_Other-alteration_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/GNG/km_GNG_BRAF-V600E_EFS_EUR_status.pdf b/analyses/survival/plots/GNG/km_GNG_BRAF-V600E_EFS_EUR_status.pdf
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diff --git a/analyses/survival/plots/HGG/forest_HGG_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/HGG/forest_HGG_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/LGG/forest_LGG_BRAF-V600E_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/LGG/forest_LGG_BRAF-V600E_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/LGG/forest_LGG_BRAF-fusion_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/LGG/forest_LGG_BRAF-fusion_EFS_subtype_EUR_status.pdf
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diff --git a/analyses/survival/plots/MB/km_MB_SHH_OS_race.pdf b/analyses/survival/plots/MB/km_MB_SHH_OS_race.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_EFS_EUR_status.pdf b/analyses/survival/plots/MB/km_MB_WNT_EFS_EUR_status.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_EFS_ethnicity.pdf b/analyses/survival/plots/MB/km_MB_WNT_EFS_ethnicity.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_EFS_predicted_ancestry.pdf b/analyses/survival/plots/MB/km_MB_WNT_EFS_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_EFS_race.pdf b/analyses/survival/plots/MB/km_MB_WNT_EFS_race.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_OS_EUR_status.pdf b/analyses/survival/plots/MB/km_MB_WNT_OS_EUR_status.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_OS_ethnicity.pdf b/analyses/survival/plots/MB/km_MB_WNT_OS_ethnicity.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_OS_predicted_ancestry.pdf b/analyses/survival/plots/MB/km_MB_WNT_OS_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MB/km_MB_WNT_OS_race.pdf b/analyses/survival/plots/MB/km_MB_WNT_OS_race.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/MES/forest_MES_EFS_subtype_EUR_status.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_EFS_subtype_ethnicity.pdf b/analyses/survival/plots/MES/forest_MES_EFS_subtype_ethnicity.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_EFS_subtype_predicted_ancestry.pdf b/analyses/survival/plots/MES/forest_MES_EFS_subtype_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_EFS_subtype_race.pdf b/analyses/survival/plots/MES/forest_MES_EFS_subtype_race.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_OS_subtype_EUR_status.pdf b/analyses/survival/plots/MES/forest_MES_OS_subtype_EUR_status.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_OS_subtype_ethnicity.pdf b/analyses/survival/plots/MES/forest_MES_OS_subtype_ethnicity.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_OS_subtype_predicted_ancestry.pdf b/analyses/survival/plots/MES/forest_MES_OS_subtype_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MES/forest_MES_OS_subtype_race.pdf b/analyses/survival/plots/MES/forest_MES_OS_subtype_race.pdf
diff --git a/analyses/survival/plots/MES/km_MES_EFS_EUR_status.pdf b/analyses/survival/plots/MES/km_MES_EFS_EUR_status.pdf
diff --git a/analyses/survival/plots/MES/km_MES_EFS_ethnicity.pdf b/analyses/survival/plots/MES/km_MES_EFS_ethnicity.pdf
diff --git a/analyses/survival/plots/MES/km_MES_EFS_predicted_ancestry.pdf b/analyses/survival/plots/MES/km_MES_EFS_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MES/km_MES_EFS_race.pdf b/analyses/survival/plots/MES/km_MES_EFS_race.pdf
diff --git a/analyses/survival/plots/MES/km_MES_OS_EUR_status.pdf b/analyses/survival/plots/MES/km_MES_OS_EUR_status.pdf
diff --git a/analyses/survival/plots/MES/km_MES_OS_ethnicity.pdf b/analyses/survival/plots/MES/km_MES_OS_ethnicity.pdf
diff --git a/analyses/survival/plots/MES/km_MES_OS_predicted_ancestry.pdf b/analyses/survival/plots/MES/km_MES_OS_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MES/km_MES_OS_race.pdf b/analyses/survival/plots/MES/km_MES_OS_race.pdf
diff --git a/analyses/survival/plots/MES_subtype_by_predicted_ancestry.pdf b/analyses/survival/plots/MES_subtype_by_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_EUR_status.pdf b/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_EUR_status.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_ethnicity.pdf b/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_ethnicity.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_predicted_ancestry.pdf b/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_race.pdf b/analyses/survival/plots/MNG/forest_MNG_EFS_subtype_race.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_OS_subtype_EUR_status.pdf b/analyses/survival/plots/MNG/forest_MNG_OS_subtype_EUR_status.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_OS_subtype_ethnicity.pdf b/analyses/survival/plots/MNG/forest_MNG_OS_subtype_ethnicity.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_OS_subtype_predicted_ancestry.pdf b/analyses/survival/plots/MNG/forest_MNG_OS_subtype_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MNG/forest_MNG_OS_subtype_race.pdf b/analyses/survival/plots/MNG/forest_MNG_OS_subtype_race.pdf
diff --git a/analyses/survival/plots/MNG/km_MNG_EFS_EUR_status.pdf b/analyses/survival/plots/MNG/km_MNG_EFS_EUR_status.pdf
diff --git a/analyses/survival/plots/MNG/km_MNG_EFS_ethnicity.pdf b/analyses/survival/plots/MNG/km_MNG_EFS_ethnicity.pdf
diff --git a/analyses/survival/plots/MNG/km_MNG_EFS_predicted_ancestry.pdf b/analyses/survival/plots/MNG/km_MNG_EFS_predicted_ancestry.pdf
diff --git a/analyses/survival/plots/MNG/km_MNG_EFS_race.pdf b/analyses/survival/plots/MNG/km_MNG_EFS_race.pdf
diff --git a/analyses/survival/plots/MNG/km_MNG_OS_EUR_status.pdf b/analyses/survival/plots/MNG/km_MNG_OS_EUR_status.pdf