This repository has been archived by the owner on Oct 2, 2024. It is now read-only.
add notebook for braf breakpoint by imaging cluster analysis #103
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| build_and_publish_image: | |
| name: Build and Publish Image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GH_TOKEN }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: pgc-images.sbgenomics.com/corbettr/pbta-ancestry | |
| tags: | | |
| type=raw,value=latest | |
| # Only tag the image with latest if we're building on the default | |
| # branch (e.g., main). | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| - name: Login to Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: pgc-images.sbgenomics.com | |
| username: ${{ secrets.CAVATICA_USERNAME }} | |
| password: ${{ secrets.CAVATICA_ACCESS_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| build-args: github_pat=${{ secrets.GH_TOKEN }} |