Fixed lots of broken links

Took 1 hour 13 minutes
curedao · Feb 10, 2022 · 398123b · 398123b
1 parent eaf730f
commit 398123b
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Showing 31 changed files with 242 additions and 302 deletions.
diff --git a/.cspell.json b/.cspell.json
@@ -5,6 +5,9 @@
     "**/node_modules/**",
     "**/vscode-extension/**",
     "**/.git/**",
+    ".git/**",
+    ".git/*",
+    ".git",
     ".vscode",
     "megalinter",
     "**/reference-databases/**",

diff --git a/.eslintrc-json.json b/.eslintrc-json.json
@@ -1,34 +1,28 @@
 {
-    "overrides": [
-        {
-            "files": ["*.json"],
-            "extends": [
-                "plugin:jsonc/recommended-with-jsonc"
-            ],
-            "parser": "jsonc-eslint-parser",
-                "parserOptions": {
-                    "jsonSyntax": "JSONC"
-            }
-        },
-        {
-            "files": ["*.jsonc"],
-            "extends": [
-                "plugin:jsonc/recommended-with-jsonc"
-            ],
-            "parser": "jsonc-eslint-parser",
-                "parserOptions": {
-                    "jsonSyntax": "JSONC"
-            }
-        },
-        {
-            "files": ["*.json5"],
-            "extends": [
-                "plugin:jsonc/recommended-with-json5"
-            ],
-            "parser": "jsonc-eslint-parser",
-                "parserOptions": {
-                    "jsonSyntax": "JSON5"
-            }
-        }
-    ]
+  "overrides": [
+    {
+      "files": ["*.json"],
+      "extends": ["plugin:jsonc/recommended-with-jsonc"],
+      "parser": "jsonc-eslint-parser",
+      "parserOptions": {
+        "jsonSyntax": "JSONC"
+      }
+    },
+    {
+      "files": ["*.jsonc"],
+      "extends": ["plugin:jsonc/recommended-with-jsonc"],
+      "parser": "jsonc-eslint-parser",
+      "parserOptions": {
+        "jsonSyntax": "JSONC"
+      }
+    },
+    {
+      "files": ["*.json5"],
+      "extends": ["plugin:jsonc/recommended-with-json5"],
+      "parser": "jsonc-eslint-parser",
+      "parserOptions": {
+        "jsonSyntax": "JSON5"
+      }
+    }
+  ]
 }
diff --git a/.gitbook/assets/open-vista_mu_api.json b/.gitbook/assets/open-vista_mu_api.json
@@ -1,30 +1,30 @@
-{
-  "name": "Default listing",
-  "description": "Default registry listing",
-  "url": "apis/Medsphere/open-vista_mu_api",
-  "offset": 0,
-  "totalCount": 1,
-  "apis": [
-    {
-      "name": "OpenVista Common Data Set API",
-      "description": "**Patient Data For Apps - OpenVista Release 2**\n\n&copy; 2017 Medsphere Systems Corporation. All rights reserved.",
-      "tags": [],
-      "properties": [
-        {
-          "type": "Swagger",
-          "url": "https://api.swaggerhub.com/apis/Medsphere/open-vista_mu_api/1.0.0"
-        },
-        { "type": "X-Version", "value": "1.0.0" },
-        { "type": "X-Created", "value": "2017-08-23T12:35:33Z" },
-        { "type": "X-Modified", "value": "2017-09-21T18:21:53Z" },
-        { "type": "X-Published", "value": "true" },
-        { "type": "X-Private", "value": "false" },
-        { "type": "X-OASVersion", "value": "2.0" },
-        { "type": "X-Notifications", "value": "false" },
-        { "type": "X-CreatedBy", "value": "" },
-        { "type": "X-SCMLastPush", "value": "" },
-        { "type": "X-SCMLastPull", "value": "" }
-      ]
-    }
-  ]
-}
+{
+  "name": "Default listing",
+  "description": "Default registry listing",
+  "url": "apis/Medsphere/open-vista_mu_api",
+  "offset": 0,
+  "totalCount": 1,
+  "apis": [
+    {
+      "name": "OpenVista Common Data Set API",
+      "description": "**Patient Data For Apps - OpenVista Release 2**\n\n&copy; 2017 Medsphere Systems Corporation. All rights reserved.",
+      "tags": [],
+      "properties": [
+        {
+          "type": "Swagger",
+          "url": "https://api.swaggerhub.com/apis/Medsphere/open-vista_mu_api/1.0.0"
+        },
+        { "type": "X-Version", "value": "1.0.0" },
+        { "type": "X-Created", "value": "2017-08-23T12:35:33Z" },
+        { "type": "X-Modified", "value": "2017-09-21T18:21:53Z" },
+        { "type": "X-Published", "value": "true" },
+        { "type": "X-Private", "value": "false" },
+        { "type": "X-OASVersion", "value": "2.0" },
+        { "type": "X-Notifications", "value": "false" },
+        { "type": "X-CreatedBy", "value": "" },
+        { "type": "X-SCMLastPush", "value": "" },
+        { "type": "X-SCMLastPull", "value": "" }
+      ]
+    }
+  ]
+}
diff --git a/.gitbook/assets/swagger (1).json b/.gitbook/assets/swagger (1).json
diff --git a/.gitbook/assets/swagger (2).json b/.gitbook/assets/swagger (2).json
diff --git a/.github/workflows/autoupdate.yaml b/.github/workflows/autoupdate.yaml
@@ -1,15 +1,15 @@
 name: autoupdate
 on:
-    push: {}
+  push: {}
 jobs:
-    autoupdate:
-        name: autoupdate
-        runs-on: ubuntu-18.04
-        steps:
-            - uses: docker://chinthakagodawita/autoupdate-action:v1
-              env:
-                  GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
-                  # See https://github.com/marketplace/actions/auto-update for options
+  autoupdate:
+    name: autoupdate
+    runs-on: ubuntu-18.04
+    steps:
+      - uses: docker://chinthakagodawita/autoupdate-action:v1
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+          # See https://github.com/marketplace/actions/auto-update for options
 #                  DRY_RUN: "false"
 #                  PR_FILTER: "labelled"
 #                  PR_LABELS: "keep up-to-date,integration"

diff --git a/.github/workflows/mega-linter.yml → .github/workflows/mega-linter.yml.disabled b/.github/workflows/mega-linter.yml → .github/workflows/mega-linter.yml.disabled
diff --git a/.htmlhintrc b/.htmlhintrc
diff --git a/.jscpd.json b/.jscpd.json
@@ -10,6 +10,7 @@
     "**/.github/**",
     "**/.idea/**",
     "**/report/**",
+    "**/plugins/optomitron-real-time-decision-support-plugin/analysis-data/**",
     "**/*.svg"
   ]
 }
diff --git a/.markdown-link-check.json b/.markdown-link-check.json
@@ -1,40 +1,67 @@
 {
-    "ignorePatterns": [
-        {
-            "pattern": "^https://commonfund.nih.gov/bd2k"
-        },
-        {
-            "pattern": "^https://www.flaticon.com/*"
-        },
-        {
-            "pattern": "^https://journals.sagepub.com/*"
-        },
-        {
-            "pattern": "^https://onlinelibrary.wiley.com/*"
-        }
-    ],
-    "replacementPatterns": [
-        {
-            "pattern": "^\_",
-            "replacement": "_"
-        },
-        {
-            "pattern": "^/",
-            "replacement": "{{BASEURL}}/"
-        }
-    ],
-    "httpHeaders": [
-        {
-            "urls": ["https://example.com"],
-            "headers": {
-                "Authorization": "Basic Zm9vOmJhcg==",
-                "Foo": "Bar"
-            }
-        }
-    ],
-    "timeout": "20s",
-    "retryOn429": true,
-    "retryCount": 5,
-    "fallbackRetryDelay": "30s",
-    "aliveStatusCodes": [200, 206]
+  "ignorePatterns": [
+    {
+      "pattern": "^https://commonfund.nih.gov/bd2k"
+    },
+    {
+      "pattern": "^https://www.flaticon.com/*"
+    },
+    {
+      "pattern": "^https://journals.sagepub.com/*"
+    },
+    {
+      "pattern": "^https://onlinelibrary.wiley.com/*"
+    },
+    {
+      "pattern": "^https://images.tango.us/*"
+    },
+    {
+      "pattern": "^https://deepdao.io/*"
+    },
+    {
+      "pattern": "https://en.wikipedia"
+    },
+    {
+      "pattern": "^https://www.nejm.org/*"
+    },
+    {
+      "pattern": "^https://dietarysupplementdatabase/*"
+    },
+    {
+      "pattern": "^https://www.dsld.nlm.nih.gov/*"
+    },
+    {
+      "pattern": "^https://www.qemedicaredata.org/*"
+    },
+    {
+      "pattern": "^https://pages.stern.nyu.edu/*"
+    },
+    {
+      "pattern": "^https://notion.so/*"
+    }
+  ],
+  "replacementPatterns": [
+    {
+      "pattern": "^_",
+      "replacement": "_"
+    },
+    {
+      "pattern": "^/",
+      "replacement": "{{BASEURL}}/"
+    }
+  ],
+  "httpHeaders": [
+    {
+      "urls": ["https://example.com"],
+      "headers": {
+        "Authorization": "Basic Zm9vOmJhcg==",
+        "Foo": "Bar"
+      }
+    }
+  ],
+  "timeout": "20s",
+  "retryOn429": true,
+  "retryCount": 5,
+  "fallbackRetryDelay": "30s",
+  "aliveStatusCodes": [200, 206]
 }
diff --git a/.markdownlint.json b/.markdownlint.json
@@ -7,7 +7,7 @@
     "line_length": 400
   },
   "MD026": {
-    "punctuation": ".,;:!。，；:"
+    "punctuation": ".,;:。，；:"
   },
   "MD029": false,
   "MD033": false,

diff --git a/.mega-linter.yml b/.mega-linter.yml
@@ -3,12 +3,29 @@
 
 APPLY_FIXES: all # all, none, or list of linter keys
 # ENABLE: # If you use ENABLE variable, all other languages/formats/tooling-formats will be disabled by default
-# ENABLE_LINTERS: # If you use ENABLE_LINTERS variable, all other linters will be disabled by default
-# DISABLE:
-  # - COPYPASTE # Uncomment to disable checks of excessive copy-pastes
-  # - SPELL # Uncomment to disable checks of spelling mistakes
+ENABLE_LINTERS:
+  [
+    YAML_YAMLLINT,
+    YAML_PRETTIER,
+    SQL_SQL_LINT,
+    MARKDOWN_MARKDOWN_LINK_CHECK,
+    ENV_DOTENV_LINTER,
+    CREDENTIALS_SECRETLINT,
+  ]
+#DISABLE:
+# - HTML
+# - COPYPASTE # Uncomment to disable checks of excessive copy-pastes
+# - SPELL # Uncomment to disable checks of spelling mistakes
 SHOW_ELAPSED_TIME: true
 FILEIO_REPORTER: true
 FILTER_REGEX_EXCLUDE: tsconfig.json
-EXCLUDED_DIRECTORIES: [.obsidian]
+EXCLUDED_DIRECTORIES:
+  [
+    .obsidian,
+    plugins/optomitron-real-time-decision-support-plugin/analysis-data,
+    plugins/optomitron-real-time-decision-support-plugin/analysis-data/*,
+    .git,
+    .github,
+    .vscode,
+  ]
 # DISABLE_ERRORS: true # Uncomment if you want MegaLinter to detect errors but not block CI to pass
diff --git a/.secretlintrc.json b/.secretlintrc.json
@@ -1,7 +1,7 @@
 {
-    "rules": [
-      {
-        "id": "@secretlint/secretlint-rule-preset-recommend"
-      }
-    ]
-  }
+  "rules": [
+    {
+      "id": "@secretlint/secretlint-rule-preset-recommend"
+    }
+  ]
+}
diff --git a/.textlintignore b/.textlintignore
@@ -2,3 +2,4 @@
 how-to/authentication/*
 reference/privacy-policy.md
 reference/security-compliance/*
+plugins/optomitron-real-time-decision-support-plugin/analysis-data/*
diff --git a/.vscode/extensions.json b/.vscode/extensions.json
@@ -3,4 +3,4 @@
         "streetsidesoftware.code-spell-checker",
         "esbenp.prettier-vscode"
     ]
-}
+}
diff --git a/README.md b/README.md
@@ -8,7 +8,7 @@ description: >-
 
 ## tl;dr
 
-CureDAO is a decentralized autonomous organization (DAO) of citizen scientists, governments, businesses, and 
+CureDAO is a decentralized autonomous organization (DAO) of citizen scientists, governments, businesses, and
 nonprofits devoted to the minimization of suffering.
 
 To achieve this, we propose the creation of an open-source framework that overcomes the traditional economic barriers to cooperation and data-sharing in the field of digital health.
@@ -36,7 +36,7 @@ It will overcome the traditional barriers to collaboration and data sharing by e
 
 ![value chain](assets/incentivization/value-flow-chain.png)
 
-## Join Us Right Now!
+## Join Us Right Now
 
 Hey, you! 👀
-Original file line number
+Diff line change
@@ Expand Up / @@ -3,4 +3,4 @@ @@
             "streetsidesoftware.code-spell-checker",
             "esbenp.prettier-vscode"
         ]
-    }
+    }