Fixed some links + component reorganization

curedao · Nov 13, 2023 · 3200695 · 3200695
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diff --git a/README.md b/README.md
@@ -29,8 +29,8 @@ dFDa-1 is an initial prototype of the decentralized FDA located in [apps/dfda-1]
 * [Data Aggregation](#data-aggregation)
 * [Data Analysis](#data-analysis)
   * [🏷️Outcome Labels](#-outcome-labels)
-  * [🔮Predictor Search Engine](docs/features/predictor-search-engine/predictor-search-engine.md)
-  * [Root Cause Analysis](docs/features/root-cause-analysis-reports/root-cause-analysis-reports.md)
+  * [🔮Predictor Search Engine](docs/components/predictor-search-engine/predictor-search-engine.md)
+  * [Root Cause Analysis](docs/components/root-cause-analysis-reports/root-cause-analysis-reports.md)
   * [📜Observational Mega-Studies](https://www.curedao.org/blog/observational-studies-plugin)
 * [Real-Time Decision Support Notifications](https://www.curedao.org/blog/optomitron)
 * [No Code Health App Builder](https://www.curedao.org/blog/no-code-health-app-builder)
@@ -117,25 +117,25 @@ It then pairs every combination of variables and identifies likely causal relati
 
 ### 🏷 Outcome Labels
 
-![outcome-labels-plugin.png](docs/features/outcome-labels/outcome-labels.png)
+![outcome-labels-plugin.png](docs/components/outcome-labels/outcome-labels.png)
 
-[More info about outcome labels](docs/features/outcome-labels/outcome-labels.md)
+[More info about outcome labels](docs/components/outcome-labels/outcome-labels.md)
 
 ### Real-time Decision Support Notifications
 
-![](docs/features/real-time-decision-support/notifications-screenshot.png)
+![](docs/components/real-time-decision-support/notifications-screenshot.png)
 
-[More info about real time decision support](docs/features/outcome-labels/outcome-labels.md)
+[More info about real time decision support](docs/components/outcome-labels/outcome-labels.md)
 
 ### 📈 Predictor Search Engine
 
-![Predictor Search](docs/features/predictor-search-engine/predictor-search-simple-list-zoom.png)
+![Predictor Search](docs/components/predictor-search-engine/predictor-search-simple-list-zoom.png)
 
 ### Auto-Generated Observational Studies
 
-![](docs/features/observational-studies/observational-studies.png)
+![](docs/components/observational-studies/observational-studies.png)
 
-[More info about observational studies](docs/features/observational-studies/observational-studies.md)
+[More info about observational studies](docs/components/observational-studies/observational-studies.md)
 
 ## Demos
 

diff --git a/docs/components/clinipedia/clinipedia_globe_circle-1280-640.png b/docs/components/clinipedia/clinipedia_globe_circle-1280-640.png
diff --git a/...es/digital-twin-safe/digital-twin-nft.png → ...ts/digital-twin-safe/digital-twin-nft.png b/...es/digital-twin-safe/digital-twin-nft.png → ...ts/digital-twin-safe/digital-twin-nft.png
diff --git a/...tal-twin-safe/digital-twin-safe-cover.png → ...tal-twin-safe/digital-twin-safe-cover.png b/...tal-twin-safe/digital-twin-safe-cover.png → ...tal-twin-safe/digital-twin-safe-cover.png
diff --git a/...l-twin-safe/digital-twin-safe-no-text.png → ...l-twin-safe/digital-twin-safe-no-text.png b/...l-twin-safe/digital-twin-safe-no-text.png → ...l-twin-safe/digital-twin-safe-no-text.png
diff --git a/...es/digital-twin-safe/digital-twin-safe.md → ...ts/digital-twin-safe/digital-twin-safe.md b/...es/digital-twin-safe/digital-twin-safe.md → ...ts/digital-twin-safe/digital-twin-safe.md
diff --git a/...s/digital-twin-safe/digital-twin-safe.png → ...s/digital-twin-safe/digital-twin-safe.png b/...s/digital-twin-safe/digital-twin-safe.png → ...s/digital-twin-safe/digital-twin-safe.png
diff --git a/...al-studies/journal-of-citizen-science.png → ...al-studies/journal-of-citizen-science.png b/...al-studies/journal-of-citizen-science.png → ...al-studies/journal-of-citizen-science.png
diff --git a/...vational-studies/observational-studies.md → ...vational-studies/observational-studies.md b/...vational-studies/observational-studies.md → ...vational-studies/observational-studies.md
@@ -4,8 +4,8 @@
 - [Impact](#impact)
 - [Study Index](#study-index)
 - [Overall Mood Mega Study](#overall-mood-mega-study)
-- [Models](../../../../apps/dfda-1/app/Studies)
-- [Front-End Views](../../../../apps/dfda-1/app/Studies)
+- [Models](../../../apps/dfda-1/app/Studies)
+- [Front-End Views](../../../apps/dfda-1/app/Studies)
 
 ## Overview
 
@@ -28,4 +28,4 @@ Observational studies are a type of study in which researchers observe the behav
 
 ## Tests
 
-[PHPUnit on Staging Environment](../../../../apps/dfda-1/tests/StagingUnitTests/C/Studies)
+[PHPUnit on Staging Environment](../../../apps/dfda-1/tests/StagingUnitTests/C/Studies)
diff --git a/...ational-studies/observational-studies.png → ...ational-studies/observational-studies.png b/...ational-studies/observational-studies.png → ...ational-studies/observational-studies.png
diff --git a/...onal-studies/overall-mood-predictors.jpeg → ...onal-studies/overall-mood-predictors.jpeg b/...onal-studies/overall-mood-predictors.jpeg → ...onal-studies/overall-mood-predictors.jpeg
diff --git a/...observational-studies/studies-cropped.jpg → ...observational-studies/studies-cropped.jpg b/...observational-studies/studies-cropped.jpg → ...observational-studies/studies-cropped.jpg
diff --git a/...bservational-studies/study-generation.png → ...bservational-studies/study-generation.png b/...bservational-studies/study-generation.png → ...bservational-studies/study-generation.png
diff --git a/...optimiton-ai-agent/optomitron-ai-agent.md → ...optimiton-ai-agent/optomitron-ai-agent.md b/...optimiton-ai-agent/optomitron-ai-agent.md → ...optimiton-ai-agent/optomitron-ai-agent.md
@@ -2,19 +2,19 @@
 
 Optimitron is an AI agent that lives in your PersonalFDA node that uses causal inference to estimate how various factors affect your health.
 
-![data-import-and-analysis.gif](../../../../images/data-import-and-analysis.gif)
+![data-import-and-analysis.gif](../../images/data-import-and-analysis.gif)
 
 Optimitron is an AI assistant that asks you about your symptoms and potential factors. Then she applies pharmacokinetic predictive analysis to inform you of the most important things you can do to minimize symptom severity.
 
-[![Click Here for Demo Video](../../../../images/optimitron-ai-assistant.png)](https://youtu.be/hd50A74o8YI)
+[![Click Here for Demo Video](../../images/optimitron-ai-assistant.png)](https://youtu.be/hd50A74o8YI)
 
 [Or Try the Prototype Here](https://demo.curedao.org/app/public/#/app/chat)
 
 #### Data Analysis
 
 Currently, we've implemented causal inference analysis of sparse time series data that takes into account onset delays and other factors.
 
-![causal-inference-vertical.svg](../causal-inference-vertical.svg)
+![causal-inference-vertical.svg](../personal-fda-nodes/data-analysis/causal-inference-vertical.svg)
 
 We're working on implementing a more robust pharmacokinetic predictive model control recurrent neural network.
 

diff --git a/...elatonin-outcome-label-without-search.png → ...elatonin-outcome-label-without-search.png b/...elatonin-outcome-label-without-search.png → ...elatonin-outcome-label-without-search.png
diff --git a/...analysis/outcome-labels/outcome-labels.md → ...mponents/outcome-labels/outcome-labels.md b/...analysis/outcome-labels/outcome-labels.md → ...mponents/outcome-labels/outcome-labels.md
diff --git a/...nalysis/outcome-labels/outcome-labels.png → ...ponents/outcome-labels/outcome-labels.png b/...nalysis/outcome-labels/outcome-labels.png → ...ponents/outcome-labels/outcome-labels.png
diff --git a/docs/components/personal-fda-nodes/personal-fda-nodes.md b/docs/components/personal-fda-nodes/personal-fda-nodes.md
@@ -6,16 +6,16 @@ PersonalFDA Nodes are composed of two components, a Digital Twin Safe and an AI
 
 ### 2.1. Digital Twin Safe
 
-![digital-twin-safe.png](digital-twin-safe/digital-twin-safe.png)
+![digital-twin-safe.png](../digital-twin-safe/digital-twin-safe.png)
 
 A local application for self-sovereign import and storage of personal data.
 
-**👉 [Learn More or Contribute to Digital Twin Safe](digital-twin-safe/digital-twin-safe.md)**
+**👉 [Learn More or Contribute to Digital Twin Safe](../digital-twin-safe/digital-twin-safe.md)**
 
 ### 2.2. Optimitron AI Agent
 
 ![data-import-and-analysis.gif](../../images/data-import-and-analysis.gif)
 
 Optimitron is an AI agent that lives in your PersonalFDA node that uses causal inference to estimate how various factors affect your health.
 
-**👉 [Learn More](data-analysis/optimiton-ai-agent/optomitron-ai-agent.md)**
+**👉 [Learn More](../optimiton-ai-agent/optomitron-ai-agent.md)**
diff --git a/...ngine/dashboard-sleep-mood-predictors.png → ...ngine/dashboard-sleep-mood-predictors.png b/...ngine/dashboard-sleep-mood-predictors.png → ...ngine/dashboard-sleep-mood-predictors.png
diff --git a/...arch-engine/mood-predictors-bar-chart.png → ...arch-engine/mood-predictors-bar-chart.png b/...arch-engine/mood-predictors-bar-chart.png → ...arch-engine/mood-predictors-bar-chart.png
diff --git a/...mood-predictors-nutrition-facts-style.png → ...mood-predictors-nutrition-facts-style.png b/...mood-predictors-nutrition-facts-style.png → ...mood-predictors-nutrition-facts-style.png
diff --git a/...ne/overall-mood-predictors-flow-chart.svg → ...ne/overall-mood-predictors-flow-chart.svg b/...ne/overall-mood-predictors-flow-chart.svg → ...ne/overall-mood-predictors-flow-chart.svg
diff --git a/...all-mood-predictors-flow-sankey-chart.png → ...all-mood-predictors-flow-sankey-chart.png b/...all-mood-predictors-flow-sankey-chart.png → ...all-mood-predictors-flow-sankey-chart.png
diff --git a/...overall-mood-predictors-network-graph.png → ...overall-mood-predictors-network-graph.png b/...overall-mood-predictors-network-graph.png → ...overall-mood-predictors-network-graph.png
diff --git a/...overall-mood-predictors-network-graph.svg → ...overall-mood-predictors-network-graph.svg b/...overall-mood-predictors-network-graph.svg → ...overall-mood-predictors-network-graph.svg
diff --git a/...search-engine/overall-mood-predictors.png → ...search-engine/overall-mood-predictors.png b/...search-engine/overall-mood-predictors.png → ...search-engine/overall-mood-predictors.png
diff --git a/...-search-engine/predictor-search-cards.png → ...-search-engine/predictor-search-cards.png b/...-search-engine/predictor-search-cards.png → ...-search-engine/predictor-search-cards.png
diff --git a/...-search-engine/predictor-search-engine.md → ...-search-engine/predictor-search-engine.md b/...-search-engine/predictor-search-engine.md → ...-search-engine/predictor-search-engine.md
diff --git a/...engine/predictor-search-no-background.png → ...engine/predictor-search-no-background.png b/...engine/predictor-search-no-background.png → ...engine/predictor-search-no-background.png
diff --git a/...ine/predictor-search-simple-list-zoom.png → ...ine/predictor-search-simple-list-zoom.png b/...ine/predictor-search-simple-list-zoom.png → ...ine/predictor-search-simple-list-zoom.png
diff --git a/...is/real-time-decision-support/3-steps.png → ...ts/real-time-decision-support/3-steps.png b/...is/real-time-decision-support/3-steps.png → ...ts/real-time-decision-support/3-steps.png
diff --git a/...e-decision-support/autoimmune-factors.PNG → ...e-decision-support/autoimmune-factors.PNG b/...e-decision-support/autoimmune-factors.PNG → ...e-decision-support/autoimmune-factors.PNG
diff --git a/...us-duration-of-action-hyperparameters.PNG → ...us-duration-of-action-hyperparameters.PNG b/...us-duration-of-action-hyperparameters.PNG → ...us-duration-of-action-hyperparameters.PNG
diff --git a/...ysis/real-time-decision-support/cover.png → ...ents/real-time-decision-support/cover.png b/...ysis/real-time-decision-support/cover.png → ...ents/real-time-decision-support/cover.png
diff --git a/...time-decision-support/diagram-curedao.gif → ...time-decision-support/diagram-curedao.gif b/...time-decision-support/diagram-curedao.gif → ...time-decision-support/diagram-curedao.gif
diff --git a/...ime-decision-support/how-much-we-know.PNG → ...ime-decision-support/how-much-we-know.PNG b/...ime-decision-support/how-much-we-know.PNG → ...ime-decision-support/how-much-we-know.PNG
diff --git a/...cision-support/inflammation-worldwide.png → ...cision-support/inflammation-worldwide.png b/...cision-support/inflammation-worldwide.png → ...cision-support/inflammation-worldwide.png
diff --git a/...lysis/real-time-decision-support/logo.png → ...nents/real-time-decision-support/logo.png b/...lysis/real-time-decision-support/logo.png → ...nents/real-time-decision-support/logo.png
diff --git a/...sion-support/notifications-screenshot.png → ...sion-support/notifications-screenshot.png b/...sion-support/notifications-screenshot.png → ...sion-support/notifications-screenshot.png
diff --git a/...cision-support/real-time-notifications.md → ...cision-support/real-time-notifications.md b/...cision-support/real-time-notifications.md → ...cision-support/real-time-notifications.md
diff --git a/.../real-time-decision-support/robot-guy.png → .../real-time-decision-support/robot-guy.png b/.../real-time-decision-support/robot-guy.png → .../real-time-decision-support/robot-guy.png
diff --git a/...enshots/notifications-screenshot-blue.png → ...enshots/notifications-screenshot-blue.png b/...enshots/notifications-screenshot-blue.png → ...enshots/notifications-screenshot-blue.png
diff --git a/...decision-support-notification-400x717.png → ...decision-support-notification-400x717.png b/...decision-support-notification-400x717.png → ...decision-support-notification-400x717.png
diff --git a/...ecision-support-notification-852x1528.png → ...ecision-support-notification-852x1528.png b/...ecision-support-notification-852x1528.png → ...ecision-support-notification-852x1528.png
diff --git a/...e-decision-support-notification-small.png → ...e-decision-support-notification-small.png b/...e-decision-support-notification-small.png → ...e-decision-support-notification-small.png
diff --git a/.../real-time-decision-support/square-24.png → .../real-time-decision-support/square-24.png b/.../real-time-decision-support/square-24.png → .../real-time-decision-support/square-24.png
diff --git a/...sis-reports/1398-root-cause-analysis.html → ...sis-reports/1398-root-cause-analysis.html b/...sis-reports/1398-root-cause-analysis.html → ...sis-reports/1398-root-cause-analysis.html
diff --git a/...-cause-analysis-reports/factors-slide.png → ...-cause-analysis-reports/factors-slide.png b/...-cause-analysis-reports/factors-slide.png → ...-cause-analysis-reports/factors-slide.png
diff --git a/...is-reports/root-cause-analysis-reports.md → ...is-reports/root-cause-analysis-reports.md b/...is-reports/root-cause-analysis-reports.md → ...is-reports/root-cause-analysis-reports.md
@@ -17,7 +17,7 @@ Thus, I automatically generate reports intended to help you and your physician g
 
 
 * [HTML Example](1398-root-cause-analysis.html)
-* [Model and Analytics Code](../../../../../apps/dfda-1/app/Reports/RootCauseAnalysis.php)
-* [Front-End View Code](../../../../../apps/dfda-1/resources/views/root-cause-content.blade.php)
+* [Model and Analytics Code](../../../apps/dfda-1/app/Reports/RootCauseAnalysis.php)
+* [Front-End View Code](../../../apps/dfda-1/resources/views/root-cause-content.blade.php)
 
 [Generate your own!](https://app.curedao.org/)
diff --git a/docs/home.md b/docs/home.md
@@ -77,25 +77,25 @@ We don't want to reinvent the wheel in any way, so if there's an existing projec
 
 [PersonalFDA Nodes](components/personal-fda-nodes/personal-fda-nodes.md) are applications that can run on your phone or computer. They import, store, and analyze your data to identify how various factors affect your health.  They can also be used to share anonymous analytical results with the [Clinipedia dFDA Wiki](#3-clinipediathe-wikipedia-of-clinical-research) in a secure and privacy-preserving manner.
 
-[PersonalFDA Nodes](components/personal-fda-nodes/personal-fda-nodes.md) are composed of two components, a [Digital Twin Safe](components/personal-fda-nodes/digital-twin-safe/digital-twin-safe.md) and a [personal AI agent](components/personal-fda-nodes/data-analysis/optimiton-ai-agent/optomitron-ai-agent.md) applies causal inference algorithms to estimate how various factors affect your health.
+[PersonalFDA Nodes](components/personal-fda-nodes/personal-fda-nodes.md) are composed of two components, a [Digital Twin Safe](components/digital-twin-safe/digital-twin-safe.md) and a [personal AI agent](components/optimiton-ai-agent/optomitron-ai-agent.md) applies causal inference algorithms to estimate how various factors affect your health.
 
 ### 2.1. Digital Twin Safes
 
-![digital-twin-safe-no-text.png](components/personal-fda-nodes/digital-twin-safe/digital-twin-safe-no-text.png)
+![digital-twin-safe-no-text.png](components/digital-twin-safe/digital-twin-safe-no-text.png)
 
 
 
 A local application for self-sovereign import and storage of personal data.
 
-**👉[Learn More or Contribute to Digital Twin Safe](components/personal-fda-nodes/digital-twin-safe/digital-twin-safe.md)**
+**👉[Learn More or Contribute to Digital Twin Safe](components/digital-twin-safe/digital-twin-safe.md)**
 
 ### 2.2. Personal AI Agents
 
-[Personal AI agents](components/personal-fda-nodes/data-analysis/optimiton-ai-agent/optomitron-ai-agent.md) that live in your [PersonalFDA nodes](components/personal-fda-nodes/personal-fda-nodes.md) and use [causal inference](components/personal-fda-nodes/data-analysis/optimiton-ai-agent/optomitron-ai-agent.md) to estimate how various factors affect your health.
+[Personal AI agents](components/optimiton-ai-agent/optomitron-ai-agent.md) that live in your [PersonalFDA nodes](components/personal-fda-nodes/personal-fda-nodes.md) and use [causal inference](components/optimiton-ai-agent/optomitron-ai-agent.md) to estimate how various factors affect your health.
 
-[![data-import-and-analysis.gif](images/data-import-and-analysis.gif)](components/personal-fda-nodes/data-analysis/optimiton-ai-agent/optomitron-ai-agent.md)
+[![data-import-and-analysis.gif](images/data-import-and-analysis.gif)](components/optimiton-ai-agent/optomitron-ai-agent.md)
 
-**👉[Learn More About Optimitron](components/personal-fda-nodes/data-analysis/optimiton-ai-agent/optomitron-ai-agent.md)**
+**👉[Learn More About Optimitron](components/optimiton-ai-agent/optomitron-ai-agent.md)**
 
 
 ## 3. Clinipedia—The Wikipedia of Clinical Research
@@ -108,11 +108,11 @@ The [Clinipedia wiki](components/clinipedia/clinipedia.md) should be a global kn
 
 ### 3.1 Outcome Labels
 
-A key component of Clinipedia are [**Outcome Labels**](components/personal-fda-nodes/data-analysis/outcome-labels/outcome-labels.md) that list the degree to which the product is likely to improve or worsen specific health outcomes or symptoms.
+A key component of Clinipedia are [**Outcome Labels**](components/outcome-labels/outcome-labels.md) that list the degree to which the product is likely to improve or worsen specific health outcomes or symptoms.
 
-![outcome-labels.png](components/personal-fda-nodes/data-analysis/outcome-labels/outcome-labels.png)
+![outcome-labels.png](components/outcome-labels/outcome-labels.png)
 
-**👉 [Learn More About Outcome Labels](components/personal-fda-nodes/data-analysis/outcome-labels/outcome-labels.md)**
+**👉 [Learn More About Outcome Labels](components/outcome-labels/outcome-labels.md)**
 
 # Human-AI Collective Intelligence Platform