Update some software versions

csoneson · Nov 11, 2021 · 8970274 · 8970274
1 parent 010a095
commit 8970274
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/.github/workflows/snakemake-run.yaml b/.github/workflows/snakemake-run.yaml
@@ -15,12 +15,12 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-latest, ubuntu-18.04]
+        os: [macos-latest, ubuntu-latest]
         include:
         - os: macos-latest
-          rversion: '4.0'
-        - os: ubuntu-18.04
-          rversion: '4.0'
+          rversion: '4.1'
+        - os: ubuntu-latest
+          rversion: '4.1'
     steps:
       - uses: actions/checkout@v2
 
@@ -53,7 +53,7 @@ jobs:
 
       - name: install snakemake and run workflow
         run: |
-          conda install snakemake=5.16.0
+          conda install snakemake=6.10.0
           mkdir -p $HOME/.R
           echo -e 'MAKEFLAGS = -j8' > $HOME/.R/Makevars
           echo 'options(Ncpus = 8)' > $HOME/.Rprofile

diff --git a/envs/environment.yaml b/envs/environment.yaml
@@ -11,5 +11,5 @@ dependencies:
 - cutadapt=3.2
 - bedtools=2.30.0
 - ucsc-bedgraphtobigwig=377
-- pandoc=2.10
+- pandoc=2.11
 - tbb=2020.2
diff --git a/envs/environment_R.yaml b/envs/environment_R.yaml
@@ -2,6 +2,6 @@ channels:
 - conda-forge
 dependencies:
 - r-base=4.0.5
-- pandoc=2.10
+- pandoc=2.11
 - r-curl=4.3.1
 - r-rsqlite=2.2.5