Update package specification

.dockerignore

@@ -0,0 +1,2 @@
+*venv/
+build/

.gitignore

@@ -1,5 +1,6 @@
 data/
 local/
+build/
 *venv/
 .idea/
 *.log
@@ -13,5 +14,5 @@ dissect/traits/sample_curves.py
 dissect/traits/**/*.json
 !dissect/traits/**/*_structure.json
 dissect/traits/**/*.txt
-DiSSECT.egg-info
+*.egg-info
 /dissect/results/

Dockerfile

@@ -1,4 +1,4 @@
-FROM sagemath/sagemath:9.4
+FROM sagemath/sagemath:9.8
 
 # Setup sage and jupyter
 RUN sage --pip3 install --no-cache-dir notebook
@@ -9,12 +9,11 @@ ARG NB_UID=1000
 ENV USER ${NB_USER}
 ENV HOME /home/sage
 ENV TARGET "${HOME}/dissect"
-COPY . ${TARGET}
 
 USER root
-RUN sed -i -re 's/([a-z]{2}.)?archive.ubuntu.com|security.ubuntu.com/old-releases.ubuntu.com/g' /etc/apt/sources.list
 RUN apt-get update && apt-get install ca-certificates
 RUN usermod -l ${NB_USER} sage
+COPY . ${TARGET}
 RUN chown -R ${NB_UID} ${TARGET}
 
 # Install DiSSECT

pyproject.toml

@@ -0,0 +1,35 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "dissect"
+version = "0.3.0"
+description = "Distinguisher of Standard & Simulated Elliptic Curves through Traits."
+authors = [
+    {name = "Vladimír Sedláček", email = "[email protected]"},
+    {name = "Vojtěch Suchánek"},
+    {name = "Antonín Dufka"},
+]
+readme = "README.md"
+license = {text = "MIT License"}
+requires-python = ">=3.8"
+dependencies = [
+    "pathlib==1.0.1",
+    "pymongo==4.4.1",
+    "pandas==2.0.3",
+    "scikit-learn==1.3.0",
+    "plotly==5.15.0",
+]
+
+[project.urls]
+Homepage = "https://dissect.crocs.fi.muni.cz/"
+Repository = "https://github.com/crocs-muni/DiSSECT.git"
+
+[project.scripts]
+dissect-database = "dissect.utils.database_handler:main"
+dissect-compute-database = "dissect.traits.run:main"
+dissect-compute-file = "dissect.traits.compute:main"
+dissect-feature_builder = "dissect.analysis.feature_builder:main"
+dissect-find_outliers = "dissect.analysis.find_outliers:main"
+dissect-detail = "dissect.analysis.detail:main"