solved conflicts in onepass.jl

.JuliaFormatter.toml

@@ -0,0 +1,7 @@
+margin = 100
+indent = 4
+whitespace_typedefs = true
+whitespace_ops_in_indices = true
+remove_extra_newlines = true
+annotate_untyped_fields_with_any = false
+normalize_line_endings = "unix"

.github/ISSUE_TEMPLATE/blank-issue.md

@@ -0,0 +1,10 @@
+---
+name: Blank issue
+about: Blank template for general issue
+title: "[General] title"
+labels: ''
+assignees: ocots
+
+---
+
+

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,31 @@
+---
+name: Bug report
+about: Create a bug report to help us improve
+title: "[Bug] title"
+labels: bug
+assignees: ocots
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Give if possible the code to reproduce the error:
+
+```julia
+julia> f(x)=1
+f (generic function with 1 method)
+
+julia> f()
+ERROR: MethodError: no method matching f()
+```
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,8 @@
+blank_issues_enabled: false
+contact_links:
+  - name: CTBase.jl package support
+    url: https://github.com/control-toolbox/CTBase.jl/discussions
+    about: Please ask and answer questions about CTBase.jl here.
+  - name: Control-toolbox organisation support
+    url: https://github.com/orgs/control-toolbox/discussions
+    about: For more general questions about control-toolbox ecosystem it's here.

.github/ISSUE_TEMPLATE/developers.md

@@ -0,0 +1,10 @@
+---
+name: 'Developers '
+about: Suggest internal modifications
+title: "[Dev] title"
+labels: internal dev
+assignees: ocots
+
+---
+
+

.github/ISSUE_TEMPLATE/documentation-suggestion.md

@@ -0,0 +1,10 @@
+---
+name: Documentation suggestion
+about: Suggest improvements or additions to the documentation
+title: "[Doc] title"
+labels: documentation
+assignees: ocots
+
+---
+
+**Please detail your suggestion.**

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,20 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: "[Feature] title"
+labels: enhancement
+assignees: ocots
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

.github/workflows/auto-assign.yml → .github/workflows/AutoAssign.yml

@@ -13,8 +13,8 @@ jobs:
       pull-requests: write
     steps:
     - name: 'Auto-assign issue'
-      uses: pozil/auto-assign-issue@v1
+      uses: pozil/auto-assign-issue@v2
       with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-          assignees: ocots, jbcaillau
-          numOfAssignee: 2
+          assignees: ocots
+          numOfAssignee: 1

.github/workflows/Breakage.yml

@@ -0,0 +1,129 @@
+# Ref: https://securitylab.github.com/research/github-actions-preventing-pwn-requests
+name: Breakage
+
+# read-only repo token
+# no access to secrets
+on:
+  pull_request:
+
+jobs:
+  break:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        pkg: [
+          "control-toolbox/CTDirect.jl",
+          "control-toolbox/CTFlows.jl",
+          "control-toolbox/OptimalControl.jl"
+        ]
+        pkgversion: [latest, stable]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      # Install Julia
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: 1
+          arch: x64
+      - uses: actions/cache@v4
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+
+      # Breakage test
+      - name: 'Breakage of ${{ matrix.pkg }}, ${{ matrix.pkgversion }} version'
+        env:
+          URL: ${{ matrix.pkg }}
+          VERSION: ${{ matrix.pkgversion }}
+        run: |
+          set -v
+          mkdir -p ./pr
+          echo "${{ github.event.number }}" > ./pr/NR
+          git clone https://github.com/$URL
+          export PKG=$(echo $URL | cut -f2 -d/)
+          cd $PKG
+          if [ $VERSION == "stable" ]; then
+            TAG=$(git tag -l "v*" --sort=-creatordate | head -n1)
+            if [ -z "$TAG" ]; then
+              TAG="no_tag"
+            else
+              git checkout $TAG
+            fi
+          else
+            TAG=$VERSION
+          fi
+          export TAG
+          julia -e 'using Pkg;
+            PKG, TAG, VERSION = ENV["PKG"], ENV["TAG"], ENV["VERSION"]
+            joburl = joinpath(ENV["GITHUB_SERVER_URL"], ENV["GITHUB_REPOSITORY"], "actions/runs", ENV["GITHUB_RUN_ID"])
+            open("../pr/$PKG-$VERSION", "w") do io
+              try
+                TAG == "no_tag" && error("Not tag for $VERSION")
+                pkg"activate .";
+                pkg"instantiate";
+                pkg"dev ../";
+                pkg"build";
+                pkg"test";
+
+                print(io, "[![](https://img.shields.io/badge/$TAG-Pass-green)]($joburl)");
+              catch e
+                @error e;
+                print(io, "[![](https://img.shields.io/badge/$TAG-Fail-red)]($joburl)");
+              end;
+            end'
+
+      - uses: actions/upload-artifact@v2
+        with:
+          name: pr
+          path: pr/
+
+  upload:
+    needs: break
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: actions/download-artifact@v2
+        with:
+          name: pr
+          path: pr/
+
+      - run: ls
+      - run: |
+          cd pr
+          echo "| Package name | latest | stable |" > MSG
+          echo "|--|--|--|" >> MSG
+          count=0
+          for file in *
+          do
+            [ "$file" == "NR" ] && continue
+            [ "$file" == "MSG" ] && continue
+            if [ $count == "0" ]; then
+              name=$(echo $file | cut -f1 -d-)
+              echo -n "| $name | "
+            else
+              echo -n "| "
+            fi
+            cat $file
+            if [ $count == "0" ]; then
+              echo -n " "
+              count=1
+            else
+              echo " |"
+              count=0
+            fi
+          done >> MSG
+
+      - uses: actions/upload-artifact@v2
+        with:
+          name: pr
+          path: pr/

.github/workflows/CI.yml

@@ -4,7 +4,6 @@ on:
   push:
     branches:
       - main
-      - develop
     tags: '*'
   pull_request:
 jobs:

.github/workflows/CommentPR.yml

@@ -0,0 +1,74 @@
+# Ref: https://securitylab.github.com/research/github-actions-preventing-pwn-requests
+name: Comment on the pull request
+
+# read-write repo token
+# access to secrets
+on:
+  workflow_run:
+    workflows: ["Breakage"]
+    types:
+      - completed
+
+jobs:
+  upload:
+    runs-on: ubuntu-latest
+    if: >
+      github.event.workflow_run.event == 'pull_request' &&
+      github.event.workflow_run.conclusion == 'success'
+    steps:
+      - name: 'Download artifact'
+        uses: actions/[email protected]
+        with:
+          script: |
+            var artifacts = await github.actions.listWorkflowRunArtifacts({
+               owner: context.repo.owner,
+               repo: context.repo.repo,
+               run_id: ${{github.event.workflow_run.id }},
+            });
+            var matchArtifact = artifacts.data.artifacts.filter((artifact) => {
+              return artifact.name == "pr"
+            })[0];
+            var download = await github.actions.downloadArtifact({
+               owner: context.repo.owner,
+               repo: context.repo.repo,
+               artifact_id: matchArtifact.id,
+               archive_format: 'zip',
+            });
+            var fs = require('fs');
+            fs.writeFileSync('${{github.workspace}}/pr.zip', Buffer.from(download.data));
+      - run: unzip pr.zip
+
+      - name: 'Comment on PR'
+        uses: actions/github-script@v6
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          script: |
+            var fs = require('fs')
+            var issue_number = Number(fs.readFileSync('./NR'))
+            var msg = fs.readFileSync('./MSG', 'utf8')
+
+            // Get the existing comments.
+            const {data: comments} = await github.rest.issues.listComments({
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              issue_number: issue_number
+            })
+
+            // Find any comment already made by the bot.
+            const botComment = comments.find(comment => comment.user.id === 41898282)
+
+            if (botComment) {
+              await github.rest.issues.updateComment({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                comment_id: botComment.id,
+                body: msg
+              })
+            } else {
+              await github.rest.issues.createComment({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                issue_number: issue_number,
+                body: msg
+              })
+            }

.github/workflows/CompatHelper.yml

@@ -0,0 +1,46 @@
+# CompatHelper v3.5.0
+name: CompatHelper
+on:
+  schedule:
+    - cron: 0 0 * * *
+  workflow_dispatch:
+permissions:
+  contents: write
+  pull-requests: write
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check if Julia is already available in the PATH
+        id: julia_in_path
+        run: which julia
+        continue-on-error: true
+      - name: Install Julia, but only if it is not already available in the PATH
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+          arch: ${{ runner.arch }}
+        if: steps.julia_in_path.outcome != 'success'
+      - name: "Add the General registry via Git"
+        run: |
+          import Pkg
+          ENV["JULIA_PKG_SERVER"] = ""
+          Pkg.Registry.add("General")
+        shell: julia --color=yes {0}
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "3"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          CompatHelper.main()
+        shell: julia --color=yes {0}
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+          # COMPATHELPER_PRIV: ${{ secrets.COMPATHELPER_PRIV }}

.github/workflows/coverage.yml → .github/workflows/Coverage.yml

@@ -16,4 +16,4 @@ jobs:
       - uses: julia-actions/julia-processcoverage@latest
       - uses: codecov/codecov-action@v4
         env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}