Avoid deprecated scipy.ndimage sub-namespaces (#49)

constantinpape · Jul 8, 2024 · 59d21b4 · 59d21b4
1 parent 3778f2a
commit 59d21b4
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diff --git a/cluster_tools/morphology/region_centers.py b/cluster_tools/morphology/region_centers.py
@@ -10,7 +10,7 @@
 import numpy as np
 import luigi
 import nifty.tools as nt
-from scipy.ndimage.morphology import distance_transform_edt
+from scipy.ndimage import distance_transform_edt
 
 import cluster_tools.utils.volume_utils as vu
 import cluster_tools.utils.function_utils as fu

diff --git a/cluster_tools/utils/volume_utils.py b/cluster_tools/utils/volume_utils.py
@@ -8,7 +8,7 @@
 import z5py
 
 from elf.wrapper.resized_volume import ResizedVolume
-from scipy.ndimage.morphology import binary_erosion
+from scipy.ndimage import binary_erosion
 from nifty.tools import blocking
 from pybdv.metadata import (write_h5_metadata,
                             write_n5_metadata,