CI: Drop py38

Updates one-off workflows (e.g. deploy) to use 3.10, and updates the test matrix otherwise. Also reformats some YAML, unfortunately. Python 3.8 is not yet EOL but has been dropped by numpy releases since Apr 2023
clbarnes · Nov 14, 2023 · 445fe9b · 445fe9b
1 parent f67e659
commit 445fe9b
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Showing 5 changed files with 103 additions and 107 deletions.
diff --git a/.github/workflows/notebooktest-package.yml b/.github/workflows/notebooktest-package.yml
@@ -4,32 +4,31 @@ on: [push]
 
 jobs:
   build:
-
     runs-on: ubuntu-latest
 
     steps:
       # This cancels any such job that is still running
-    - name: Cancel Previous Runs
-      uses: styfle/[email protected]
-      with:
-        access_token: ${{ github.token }}
-    - uses: actions/checkout@v2
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v1
-      with:
-        python-version: 3.8
-    - name: Install graphviz
-      run: |
-        sudo apt-get install -y graphviz graphviz-dev
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d
-        python -m pip install -e .[test-notebook]
-    - name: Run notebooks
-      env:
-        NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }}
-        INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }}
-        INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }}
-      run: |
-        python tests/test_notebooks.py
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v2
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v1
+        with:
+          python-version: 3.10
+      - name: Install graphviz
+        run: |
+          sudo apt-get install -y graphviz graphviz-dev
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d
+          python -m pip install -e .[test-notebook]
+      - name: Run notebooks
+        env:
+          NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }}
+          INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }}
+          INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }}
+        run: |
+          python tests/test_notebooks.py
diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml
@@ -10,27 +10,27 @@ jobs:
     name: Build and publish Python 🐍 distributions 📦 to PyPI
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@master
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v1
-      with:
-        python-version: 3.8
-    - name: Install wheel and setuptools
-      run: >-
-        python -m
-        pip install
-        wheel
-        setuptools
-        extreqs
-        --user
-        --upgrade
-    - name: Build a binary wheel and a source tarball
-      run: >-
-        python3
-        setup.py
-        sdist
-        bdist_wheel
-    - name: Publish distribution 📦 to PyPI
-      uses: pypa/gh-action-pypi-publish@master
-      with:
-        password: ${{ secrets.pypi_password }}
+      - uses: actions/checkout@master
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v1
+        with:
+          python-version: 3.10
+      - name: Install wheel and setuptools
+        run: >-
+          python -m
+          pip install
+          wheel
+          setuptools
+          extreqs
+          --user
+          --upgrade
+      - name: Build a binary wheel and a source tarball
+        run: >-
+          python3
+          setup.py
+          sdist
+          bdist_wheel
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          password: ${{ secrets.pypi_password }}
diff --git a/.github/workflows/test-install.yml b/.github/workflows/test-install.yml
@@ -16,31 +16,30 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-latest]
         python-version:
-          - "3.8"
           - "3.9"
           - "3.10"
     runs-on: ${{ matrix.os }}
     steps:
       # This cancels any such job that is still runnning
-    - name: Cancel Previous Runs
-      uses: styfle/[email protected]
-      with:
-        access_token: ${{ github.token }}
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install Linux libraries
-      run: |
-        sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
-          libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
-          libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0
-      if: ${{ matrix.os == 'ubuntu-latest' }}
-    - name: Install dependencies
-      run: |
-        pip install --upgrade pip wheel
-    - name: Install navis from Github
-      run: pip install git+https://github.com/navis-org/navis@master
-    - name: Test import
-      run: python3 -c "import navis"
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install Linux libraries
+        run: |
+          sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
+            libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
+            libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0
+        if: ${{ matrix.os == 'ubuntu-latest' }}
+      - name: Install dependencies
+        run: |
+          pip install --upgrade pip wheel
+      - name: Install navis from Github
+        run: pip install git+https://github.com/navis-org/navis@master
+      - name: Test import
+        run: python3 -c "import navis"
diff --git a/.github/workflows/test-package.yml b/.github/workflows/test-package.yml
@@ -8,42 +8,41 @@ jobs:
     strategy:
       matrix:
         python-version:
-          - "3.8"
           - "3.9"
           - "3.10"
         igraph: ["igraph", "no-igraph"]
     steps:
       # This cancels any such job that is still runnning
-    - name: Cancel Previous Runs
-      uses: styfle/[email protected]
-      with:
-        access_token: ${{ github.token }}
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install Linux libraries
-      run: |
-        sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
-          libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
-          libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev
-    - name: Install dependencies
-      run: |
-        pip install --upgrade pip
-        pip install zstandard==0.16.0
-        pip install numpy
-        pip install flybrains --no-deps
-        pip install git+https://github.com/siavashk/pycpd@master
-        pip install k3d
-        pip install pyarrow
-    - name: Install navis
-      run: pip install -e .[dev,vispy-pyqt5,pathos,cloudvolume]
-    - run: pip install python-igraph
-      if: ${{ matrix.igraph == 'igraph' }}
-    - name: Test
-      uses: GabrielBB/xvfb-action@v1
-      with:
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install Linux libraries
         run: |
-          export NAVIS_HEADLESS=TRUE
-          pytest --verbose
+          sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
+            libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
+            libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev
+      - name: Install dependencies
+        run: |
+          pip install --upgrade pip
+          pip install zstandard==0.16.0
+          pip install numpy
+          pip install flybrains --no-deps
+          pip install git+https://github.com/siavashk/pycpd@master
+          pip install k3d
+          pip install pyarrow
+      - name: Install navis
+        run: pip install -e .[dev,vispy-pyqt5,pathos,cloudvolume]
+      - run: pip install python-igraph
+        if: ${{ matrix.igraph == 'igraph' }}
+      - name: Test
+        uses: GabrielBB/xvfb-action@v1
+        with:
+          run: |
+            export NAVIS_HEADLESS=TRUE
+            pytest --verbose
diff --git a/setup.py b/setup.py
@@ -66,15 +66,14 @@
         'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)',
 
         'Programming Language :: Python :: 3',
-        'Programming Language :: Python :: 3.8',
         'Programming Language :: Python :: 3.9',
         'Programming Language :: Python :: 3.10',
     ],
     install_requires=install_requires,
     extras_require=dict(extras_require),
     tests_require=extras_require["dev"],
     # CI runs against >=3.8
-    python_requires='>=3.8',
+    python_requires='>=3.9',
     zip_safe=False,
 
     include_package_data=True