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Updates to QA Routines #2

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Updates to QA Routines #2

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16 changes: 8 additions & 8 deletions input/cql/CovidConditions.cql
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Expand Up @@ -12,14 +12,14 @@ context Patient
/// Report QA analysis with count of resources, no PHI.
define ReportConditionsQA:
{
"All Conditions": Count(UE."All Conditions"),
"Active Problem List": Count(UE."Active Problem List Items"),
"Inactive Problem List": Count("Inactive Problem List"),
"Encounter Diagnoses": Count(UE."All Encounter Diagnoses"),
"Uncategorized Conditions": Count("Uncategorized Conditions"),
"Conditions Without Preferred Code": Count("Conditions Without Preferred Code"),
"Conditions With SNOMED Code": Count(UE."All Conditions".snomedCodes()),
"Conditions With ICD-10 Code": Count(UE."All Conditions".icd10Codes())
"All Conditions Count": Count(UE."All Conditions"),
"Active Problem List Count": Count(UE."Active Problem List Items"),
"Inactive Problem List Count": Count("Inactive Problem List"),
"Encounter Diagnoses Count": Count(UE."All Encounter Diagnoses"),
"Uncategorized Conditions Count": Count("Uncategorized Conditions"),
"Conditions Without Preferred Code Count": Count("Conditions Without Preferred Code"),
"Conditions With SNOMED Code Count": Count(UE."All Conditions".snomedCodes()),
"Conditions With ICD-10 Code Count": Count(UE."All Conditions".icd10Codes())
}

/// Report boolean values for input to ML model. Also list of codes for active problem list items.
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10 changes: 5 additions & 5 deletions input/cql/CovidEncounters.cql
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Expand Up @@ -40,11 +40,11 @@ context Patient

define ReportEncounters:
{
"Outpatient": Count("Outpatient Encounters"),
"Inpatient": Count("Inpatient Encounters"),
"EmergencyDepartment": Count("Emergency Department Encounters"),
"Encounters with Reason": Count("Encounters with Reason"),
"All": Count("All Encounters")
"Outpatient Count": Count("Outpatient Encounters"),
"Inpatient Count": Count("Inpatient Encounters"),
"EmergencyDepartment Count": Count("Emergency Department Encounters"),
"Encounters with Reason Count": Count("Encounters with Reason"),
"All Count": Count("All Encounters")
}

define "Outpatient Encounters":
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59 changes: 29 additions & 30 deletions input/cql/CovidLabResults.cql
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Expand Up @@ -13,37 +13,36 @@ context Patient
define ReportLabResultsQA:
{
"Lab Results Count": Count(UE."All Laboratory Results"),
"Lab Results Without Preferred Code": Count("Lab Results Without Preferred Code"),

"COVID19 Lab Tests": Count("COVID19 Lab Tests"),
"Hemoglobin A1C": Count("Hemoglobin A1C"),
"Blood Urea Nitrogen": Count("Blood Urea Nitrogen"),
"Bilirubin lab test": Count("Bilirubin lab test"),
"Troponin Lab Test": Count("Troponin Lab Test"),
"Ferritin": Count("Ferritin"),
"Glucose Tolerance Testing": Count("Glucose Tolerance Testing"),
"Cerebral Spinal Fluid (CSF) Analysis": Count("Cerebral Spinal Fluid (CSF) Analysis"),

"Arterial Blood Gas": Count("Arterial Blood Gas"),
"Comprehensive Metabolic Panel": Count("Comprehensive Metabolic Panel"),
"Calcium in Blood, Serum or Plasma": Count("Calcium in Blood, Serum or Plasma"),
"Magnesium in Blood, Serum or Plasma": Count("Magnesium in Blood, Serum or Plasma"),
"Magnesium in Urine": Count("Magnesium in Urine"),
"Chloride, Urine": Count("Chloride, Urine"),
"Chloride, Blood, Serum, or Plasma": Count("Chloride, Blood, Serum, or Plasma"),
"Creatinine, Urine": Count("Creatinine, Urine"),
"Creatinine, Blood, Serum, or Plasma": Count("Creatinine, Blood, Serum, or Plasma"),
"Lab Results Without Preferred Code Count": Count("Lab Results Without Preferred Code"),

"COVID19 Lab Tests Count": Count("COVID19 Lab Tests"),
"Hemoglobin A1C Count": Count("Hemoglobin A1C"),
"Blood Urea Nitrogen Count": Count("Blood Urea Nitrogen"),
"Bilirubin lab test Count": Count("Bilirubin lab test"),
"Troponin Lab Test Count": Count("Troponin Lab Test"),
"Ferritin Count": Count("Ferritin"),
"Glucose Tolerance Testing Count": Count("Glucose Tolerance Testing"),
"Cerebral Spinal Fluid (CSF) Analysis Count": Count("Cerebral Spinal Fluid (CSF) Analysis"),
"Arterial Blood Gas Count": Count("Arterial Blood Gas"),
"Comprehensive Metabolic Panel Count": Count("Comprehensive Metabolic Panel"),
"Calcium in Blood, Serum or Plasma Count": Count("Calcium in Blood, Serum or Plasma"),
"Magnesium in Blood, Serum or Plasma Count": Count("Magnesium in Blood, Serum or Plasma"),
"Magnesium in Urine Count": Count("Magnesium in Urine"),
"Chloride, Urine Count": Count("Chloride, Urine"),
"Chloride, Blood, Serum, or Plasma Count": Count("Chloride, Blood, Serum, or Plasma"),
"Creatinine, Urine Count": Count("Creatinine, Urine"),
"Creatinine, Blood, Serum, or Plasma Count": Count("Creatinine, Blood, Serum, or Plasma"),
"Phosphate Blood, Serum, or Plasma": Count("Phosphate Blood, Serum, or Plasma"),
"Coagulation Assay": Count("Coagulation Assay"),
"Complete Blood Count": Count("Complete Blood Count"),
"Creatine Kinase Blood, Serum, or Plasma": Count("Creatine Kinase Blood, Serum, or Plasma"),
"D Dimer Test": Count("D Dimer Test"),
"Electrolytes Panel Blood, Serum, or Plasma": Count("Electrolytes Panel Blood, Serum, or Plasma"),
"Inflammatory Markers (CRP) Blood, Serum, or Plasma": Count("Inflammatory Markers (CRP) Blood, Serum, or Plasma"),
"Lipid Serum, or Plasma": Count("Lipid Serum, or Plasma"),
"Sputum Culture": Count("Sputum Culture"),
"Urine Collection 24 Hours": Count("Urine Collection 24 Hours"),
"Urine Routine": Count("Urine Routine")
"Coagulation Assay Count": Count("Coagulation Assay"),
"Complete Blood Count Count": Count("Complete Blood Count"),
"Creatine Kinase Blood, Serum, or Plasma Count": Count("Creatine Kinase Blood, Serum, or Plasma"),
"D Dimer Test Count": Count("D Dimer Test"),
"Electrolytes Panel Blood, Serum, or Plasma Count": Count("Electrolytes Panel Blood, Serum, or Plasma"),
"Inflammatory Markers (CRP) Blood, Serum, or Plasma Count": Count("Inflammatory Markers (CRP) Blood, Serum, or Plasma"),
"Lipid Serum, or Plasma Count": Count("Lipid Serum, or Plasma"),
"Sputum Culture Count": Count("Sputum Culture"),
"Urine Collection 24 Hours Count": Count("Urine Collection 24 Hours"),
"Urine Routine Count": Count("Urine Routine")
}

// Most recent FHIR Observation for each laboratory data element.
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2 changes: 1 addition & 1 deletion input/cql/CovidMedications.cql
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Expand Up @@ -12,7 +12,7 @@ context Patient
define ReportMedicationsQA:
{
"MedicationRequest Count": Count("All Medication Requests"),
"Medications Without Preferred Code": Count("Medications Without Preferred Code")
"Medications Without Preferred Code Count": Count("Medications Without Preferred Code")
}

/// Report a list of codes for all procedures, using preferred coding system.
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4 changes: 2 additions & 2 deletions input/cql/CovidProcedures.cql
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Expand Up @@ -11,8 +11,8 @@ context Patient
/// Report QA analysis with count of resources, no PHI.
define ReportProceduresQA:
{
"All Procedures": Count("All Procedures"),
"Procedures Without Preferred Code": Count("Procedures Without Preferred Code")
"All Procedures Count": Count("All Procedures"),
"Procedures Without Preferred Code Count": Count("Procedures Without Preferred Code")
}

/// Report a list of codes for all procedures, using preferred coding system.
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21 changes: 10 additions & 11 deletions input/cql/CovidVitalSigns.cql
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Expand Up @@ -12,17 +12,16 @@ context Patient
/// Report QA analysis with count of resources, no PHI.
define ReportVitalSignsQA:
{
"All Vital Signs": Count("All Vital Signs"),
"Blood Pressure": Count("Blood Pressure"),
"Body Weight": Count("Body Weight"),
"Body Height": Count("Body Height"),
"BMI": Count("Body Mass Index"),
"Body Temperature": Count("Body Temperature"),
"Heart Rate": Count("Heart Rate"),
"Oxygen Saturation": Count("Oxygen Saturation"),
"Respiratory Rate": Count("Respiratory Rate"),

"Vital Signs Without Preferred Code": Count("Vital Signs Without Preferred Code")
"All Vital Signs Count": Count("All Vital Signs"),
"Blood Pressure Count": Count("Blood Pressure"),
"Body Weight Count": Count("Body Weight"),
"Body Height Count": Count("Body Height"),
"BMI Count": Count("Body Mass Index"),
"Body Temperature Count": Count("Body Temperature"),
"Heart Rate Count": Count("Heart Rate"),
"Oxygen Saturation Count": Count("Oxygen Saturation"),
"Respiratory Rate Count": Count("Respiratory Rate"),
"Vital Signs Without Preferred Code Count": Count("Vital Signs Without Preferred Code")
}

// Most recent FHIR Observation for each vital sign data element.
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