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Add lab value set codes for ACEP Dec updates #18

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merged 4 commits into from
Jan 20, 2022
Merged

Add lab value set codes for ACEP Dec updates #18

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cd14ef4
Add new codes from ACEP dec update.
Jan 4, 2022
00a4b51
Remove duplicate valueset code files.
Jan 5, 2022
8d58241
Update README.
Jan 5, 2022
7b904bd
Update createLabValuesetFile.py to accept input file as argument.
Jan 5, 2022
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2 changes: 1 addition & 1 deletion input/cql/healthCodes.json
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92,262 changes: 46,239 additions & 46,023 deletions input/cql/valueset-db.json
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76 changes: 76 additions & 0 deletions input/vocabulary/ValueSet/valueset-covid-19-lab-alanine-aminotransferase.json
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{
"resourceType": "ValueSet",
"id": "covid-19-lab-alanine-aminotransferase",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-executablevalueset"
]
},
"language": "en",
"extension": [
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeCapability",
"valueCode": "executable"
},
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeRepresentationLevel",
"valueCode": "executable"
}
],
"url": "http://fhir.org/guides/acep/ValueSet/covid-19-lab-alanine-aminotransferase",
"version": "0.5.0",
"name": "COVID19LabAlanineAminotransferase",
"title": "COVID-19 Laboratory Value Set for Alanine Aminotransferase",
"status": "active",
"date": "2022-01-04T20:00:00+00:00",
"description": "COVID-19 Laboratory Value Set for Alanine Aminotransferase",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "77144-4"
},
{
"code": "1742-6"
},
{
"code": "1744-2"
},
{
"code": "1743-4"
},
{
"code": "44785-4"
}
]
}
]
},
"expansion": {
"timestamp": "2021-03-14T21:43:10-06:00",
"contains": [
{
"system": "http://loinc.org",
"code": "77144-4"
},
{
"system": "http://loinc.org",
"code": "1742-6"
},
{
"system": "http://loinc.org",
"code": "1744-2"
},
{
"system": "http://loinc.org",
"code": "1743-4"
},
{
"system": "http://loinc.org",
"code": "44785-4"
}
]
}
}
69 changes: 69 additions & 0 deletions input/vocabulary/ValueSet/valueset-covid-19-lab-aspartate-aminotransferase.json
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{
"resourceType": "ValueSet",
"id": "covid-19-lab-aspartate-aminotransferase",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-executablevalueset"
]
},
"language": "en",
"extension": [
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeCapability",
"valueCode": "executable"
},
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeRepresentationLevel",
"valueCode": "executable"
}
],
"url": "http://fhir.org/guides/acep/ValueSet/covid-19-lab-aspartate-aminotransferase",
"version": "0.5.0",
"name": "COVID19LabAspartateAminotransferase",
"title": "COVID-19 Laboratory Value Set for Aspartate Aminotransferase",
"status": "active",
"date": "2022-01-04T20:00:00+00:00",
"description": "COVID-19 Laboratory Value Set for Aspartate Aminotransferase",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "1920-8"
},
{
"code": "88112-8"
},
{
"code": "30239-8"
},
{
"code": "44786-2"
}
]
}
]
},
"expansion": {
"timestamp": "2021-03-14T21:43:10-06:00",
"contains": [
{
"system": "http://loinc.org",
"code": "1920-8"
},
{
"system": "http://loinc.org",
"code": "88112-8"
},
{
"system": "http://loinc.org",
"code": "30239-8"
},
{
"system": "http://loinc.org",
"code": "44786-2"
}
]
}
}
69 changes: 69 additions & 0 deletions input/vocabulary/ValueSet/valueset-covid-19-lab-c-reactive-protein.json
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{
"resourceType": "ValueSet",
"id": "covid-19-lab-c-reactive-protein",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-executablevalueset"
]
},
"language": "en",
"extension": [
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeCapability",
"valueCode": "executable"
},
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeRepresentationLevel",
"valueCode": "executable"
}
],
"url": "http://fhir.org/guides/acep/ValueSet/covid-19-lab-c-reactive-protein",
"version": "0.5.0",
"name": "COVID19LabCReactiveProtein",
"title": "COVID-19 Laboratory Value Set for C Reactive Protein",
"status": "active",
"date": "2022-01-04T20:00:00+00:00",
"description": "COVID-19 Laboratory Value Set for C Reactive Protein",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "1988-5"
},
{
"code": "30522-7"
},
{
"code": "76485-2"
},
{
"code": "76486-0"
}
]
}
]
},
"expansion": {
"timestamp": "2021-03-14T21:43:10-06:00",
"contains": [
{
"system": "http://loinc.org",
"code": "1988-5"
},
{
"system": "http://loinc.org",
"code": "30522-7"
},
{
"system": "http://loinc.org",
"code": "76485-2"
},
{
"system": "http://loinc.org",
"code": "76486-0"
}
]
}
}
83 changes: 83 additions & 0 deletions input/vocabulary/ValueSet/valueset-covid-19-lab-fibrin.json
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{
"resourceType": "ValueSet",
"id": "covid-19-lab-fibrin",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-executablevalueset"
]
},
"language": "en",
"extension": [
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeCapability",
"valueCode": "executable"
},
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeRepresentationLevel",
"valueCode": "executable"
}
],
"url": "http://fhir.org/guides/acep/ValueSet/covid-19-lab-fibrin",
"version": "0.5.0",
"name": "COVID19LabFibrin",
"title": "COVID-19 Laboratory Value Set for Fibrin",
"status": "active",
"date": "2022-01-04T20:00:00+00:00",
"description": "COVID-19 Laboratory Value Set for Fibrin",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "91556-1"
},
{
"code": "48066-5"
},
{
"code": "48058-2"
},
{
"code": "71427-9"
},
{
"code": "48065-7"
},
{
"code": "48067-3"
}
]
}
]
},
"expansion": {
"timestamp": "2021-03-14T21:43:10-06:00",
"contains": [
{
"system": "http://loinc.org",
"code": "91556-1"
},
{
"system": "http://loinc.org",
"code": "48066-5"
},
{
"system": "http://loinc.org",
"code": "48058-2"
},
{
"system": "http://loinc.org",
"code": "71427-9"
},
{
"system": "http://loinc.org",
"code": "48065-7"
},
{
"system": "http://loinc.org",
"code": "48067-3"
}
]
}
}
90 changes: 90 additions & 0 deletions input/vocabulary/ValueSet/valueset-covid-19-lab-interleukin-1.json
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{
"resourceType": "ValueSet",
"id": "covid-19-lab-interleukin-1",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-executablevalueset"
]
},
"language": "en",
"extension": [
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeCapability",
"valueCode": "executable"
},
{
"url": "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-knowledgeRepresentationLevel",
"valueCode": "executable"
}
],
"url": "http://fhir.org/guides/acep/ValueSet/covid-19-lab-interleukin-1",
"version": "0.5.0",
"name": "COVID19LabInterleukin1",
"title": "COVID-19 Laboratory Value Set for Interleukin 1",
"status": "active",
"date": "2022-01-04T20:00:00+00:00",
"description": "COVID-19 Laboratory Value Set for Interleukin 1",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "34407-7"
},
{
"code": "4650-8"
},
{
"code": "33821-0"
},
{
"code": "13629-1"
},
{
"code": "55926-0"
},
{
"code": "55927-8"
},
{
"code": "17022-5"
}
]
}
]
},
"expansion": {
"timestamp": "2021-03-14T21:43:10-06:00",
"contains": [
{
"system": "http://loinc.org",
"code": "34407-7"
},
{
"system": "http://loinc.org",
"code": "4650-8"
},
{
"system": "http://loinc.org",
"code": "33821-0"
},
{
"system": "http://loinc.org",
"code": "13629-1"
},
{
"system": "http://loinc.org",
"code": "55926-0"
},
{
"system": "http://loinc.org",
"code": "55927-8"
},
{
"system": "http://loinc.org",
"code": "17022-5"
}
]
}
}
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