LLM-driven curation assist tool

Modular curation services for Caltech WormBase data

Extacting tables from PDFs using AWS textract

Ontology Access Kit: A python library and command line application for working with ontologies

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

Minting and Tracking Identifiers (MaTI)

Learning Deep Learning

Working repository for v2 of CARO

Pathogen-Host Interaction Phenotype Ontology

XAO represents the anatomy and development of the African frogs Xenopus laevis and X. tropicalis.

sparql templates for linkml (alpha)

Non-Coding RNA Ontology

Taxonomic rank ontology

An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces

XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.

source files for OBA (Ontology of Biological Attributes)

Fission Yeast Phenotype Ontology

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Utility for working with DOSDP design patterns and OWL ontologies

Data transformation framework for LinkML data models

Schema and generated objects for biolink data model and upper ontology

Repository for the Human Disease Ontology.

OWL API main repository

Epidemiology and monitoring ontology for COVID-19

Ontologies for mouse anatomy and development

The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates

The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.