Don't wrap diamond_args in quotes on WDL expansion when run locally

chanzuckerberg · May 3, 2024 · ffb4a0f · ffb4a0f
1 parent ca8e5ae
commit ffb4a0f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl
@@ -612,7 +612,7 @@ task RunNRAlignment {
 
         if [[ "~{run_locally}" == true ]]; then
           diamond makedb --in "~{local_diamond_index}" -d reference
-          diamond blastx -d reference -q "~{assembled_reads_fa}" -o "diamond.m8" "~{diamond_args}"
+          diamond blastx -d reference -q "~{assembled_reads_fa}" -o "diamond.m8" ~{diamond_args}
         else
           python3 <<CODE
         import os