update PHAGE_FAMILIES_NAMES

chanzuckerberg · May 3, 2024 · 15c9556 · 15c9556
1 parent dfb8475
commit 15c9556
Showing 1 changed file with 87 additions and 27 deletions.
diff --git a/workflows/index-generation/generate_lineage_csvs.py b/workflows/index-generation/generate_lineage_csvs.py
@@ -43,33 +43,93 @@
 # We label as 'phage' all of the prokaryotic (bacterial and archaeal) virus families
 # listed here: https://en.wikipedia.org/wiki/Bacteriophage
 PHAGE_FAMILIES_NAMES = {
-    "Myoviridae",
-    "Siphoviridae",
-    "Podoviridae",
-    "Lipothrixviridae",
-    "Rudiviridae",
-    "Ampullaviridae",
-    "Bicaudaviridae",
-    "Clavaviridae",
-    "Corticoviridae",
-    "Cystoviridae",
-    "Fuselloviridae",
-    "Globuloviridae",
-    "Guttaviridae",
-    "Inoviridae",
-    "Leviviridae",
-    "Microviridae",
-    "Plasmaviridae",
-    "Tectiviridae",
-    "Turriviridae",
-    "Ackermannviridae",
-    "Sphaerolipoviridae",
-    "Pleolipoviridae",
-    "Finnlakeviridae",
-    "Portogloboviridae",
-    "Spiraviridae",
-    "Tristromaviridae",
-}
+    'Ackermannviridae',
+    'Ampullaviridae',
+    'Andrewesvirinae',
+    'Arquatrovirinae',
+    'Atkinsviridae',
+    'Autographiviridae',
+    'Autolykiviridae',
+    'Azeredovirinae',
+    'Bclasvirinae',
+    'Beephvirinae',
+    'Bicaudaviridae',
+    'Blumeviridae',
+    'Boydwoodruffvirinae',
+    'Bronfenbrennervirinae',
+    'Ceeclamvirinae',
+    'Chaseviridae',
+    'Chebruvirinae',
+    'Clavaviridae',
+    'Corticoviridae',
+    'Cystoviridae',
+    'Dclasvirinae',
+    'Deejayvirinae',
+    'Demerecviridae',
+    'Dolichocephalovirinae',
+    'Drexlerviridae',
+    'Duinviridae',
+    'Eekayvirinae',
+    'Eucampyvirinae',
+    'Fiersviridae',
+    'Finnlakeviridae',
+    'Fuselloviridae',
+    'Gclasvirinae',
+    'Globuloviridae',
+    'Gochnauervirinae',
+    'Gorgonvirinae',
+    'Gracegardnervirinae',
+    'Guenliviridae',
+    'Guernseyvirinae',
+    'Gutmannvirinae',
+    'Guttaviridae',
+    'Halspiviridae',
+    'Hendrixvirinae',
+    'Herelleviridae',
+    'Inoviridae',
+    'Kantovirinae',
+    'Langleyhallvirinae',
+    'Leviviridae',
+    'Lipothrixviridae',
+    'Matshushitaviridae',
+    'Mccleskeyvirinae',
+    'Microviridae',
+    'Myoviridae',
+    'Nclasvirinae',
+    'Nymbaxtervirinae',
+    'Ounavirinae',
+    'Paulinoviridae',
+    'Pclasvirinae',
+    'Plasmaviridae',
+    'Plectroviridae',
+    'Pleolipoviridae',
+    'Podoviridae',
+    'Portogloboviridae',
+    'Queuovirinae',
+    'Rountreeviridae',
+    'Rudiviridae',
+    'Ruthgordonvirinae',
+    'Salasmaviridae',
+    'Schitoviridae',
+    'Sepvirinae',
+    'Simuloviridae',
+    'Siphoviridae',
+    'Skryabinvirinae',
+    'Solspiviridae',
+    'Sphaerolipoviridae',
+    'Spiraviridae',
+    'Steitzviridae',
+    'Stephanstirmvirinae',
+    'Tectiviridae',
+    'Thaspiviridae',
+    'Trabyvirinae',
+    'Tristromaviridae',
+    'Turriviridae',
+    'Tybeckvirinae',
+    'Vequintavirinae',
+    'Weiservirinae',
+    'Zobellviridae',
+ }
 
 
 def generate_taxon_lineage_names(