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phoenixAja committed Mar 5, 2024
1 parent 5456578 commit 049cc8c
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions workflows/index-generation/test/test_wdl.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,12 +9,14 @@
class TestIndexGeneration(WDLTestCase):
"""Tests the RunValidateInput function"""

base = "https://idseq-samples-test.s3-us-west-2.amazonaws.com/index-generation/inputs"

wdl = os.path.join(os.path.dirname(__file__), "..", "index-generation.wdl")
common_inputs = {
"index_name": "2020-04-20",
"ncbi_server": "https://idseq-samples-test.s3-us-west-2.amazonaws.com/index-generation/inputs",
"provided_nt": "https://idseq-samples-test.s3-us-west-2.amazonaws.com/index-generation/inputs/blast/db/FASTA/nt.gz",
"provided_nr": "https://idseq-samples-test.s3-us-west-2.amazonaws.com/index-generation/inputs/blast/db/FASTA/nr.gz",
"ncbi_server": base,
"provided_nt": f"{base}/blast/db/FASTA/nt.gz",
"provided_nr": f"{base}/blast/db/FASTA/nr.gz",
}

def testIndexGeneration(self):
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