v1.10.0

Census S3 H5AD bucket now is limited to data present in Census

Beginning with the 2024-01-29 Census weekly build, the Census build will only include H5AD files contributing data to companion SOMA objects. Previously, Census builds included all H5ADs in the CELLxGENE corpus. Put another way, if a dataset fails to contribute a cell to the Census, the dataset H5AD will not be present in the Census build h5ad directory.

Census uses CELLxGENE schema version 4.0.0

The Census is now using CELLxGENE schema version 4.0.0.

Additions

• [docs] Adds biological demonstration notebooks by @atarashansky in #875
• [docs] Add citation notebooks by @pablo-gar in #916
• [builder] schema 4.0 by @bkmartinjr in #872

Breaking changes

• [python] remove deprecated X_sparse_iter API by @bkmartinjr in #962

What’s Changed

• [python] [R] upgrade tiledbsoma to 1.7.0 by @bkmartinjr in #969
• [docs] add no-sign-request flag to model download in tutorials by @pablo-gar in #956
• [builder] remove unused H5AD files from build by @bkmartinjr in #946
• [python] Syntactic sugar for specifying tiledb_config options by @atolopko-czi in #902
• [python] Make default soma context available for customization by @atolopko-czi in #895

New Contributors

• @atarashansky made their first contribution in #875
• @seve made their first contribution in #846

Full Changelog: v1.9.1...v1.10.0