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Ivirshup/census builder spatial visium cols #1344

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ivirshup
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@@ -311,7 +379,7 @@ def get_obs_and_var(
logger.debug(f"{spec.name} - H5AD has no data after filtering, skipping {dataset.dataset_id}")
return pd.DataFrame(), pd.DataFrame()

obs_df = adata.obs.copy()
obs_df = adata.obs.copy().convert_dtypes()
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@ivirshup ivirshup merged commit 3cd7f06 into ivirshup/census-builder-spatial Jan 30, 2025
6 of 9 checks passed
@ivirshup ivirshup deleted the ivirshup/census-builder-spatial-visium-cols branch January 30, 2025 20:01
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2 participants