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[docs] Update bucket name in AWS Open Data docpage (#851)
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ebezzi authored Nov 7, 2023
1 parent 597c2c3 commit 0c732c5
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions docs/cellxgene_census_aws_open_data.md
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ The single-cell data from CZ CELLxGENE Discover included in Census (see [inclusi
<td rowspan="2"><a href="https://github.com/TileDB-Inc/TileDB">TileDB</a></td>
<td><a href="https://github.com/chanzuckerberg/cellxgene-census/tree/main">CELLxGENE-Census</a></td>
<td rowspan="2"><a href="https://github.com/chanzuckerberg/cellxgene-census/blob/main/docs/cellxgene_census_schema.md">CZ CELLxGENE Discover <b>Census</b> Schema</a></td>
<td rowspan="2">s3://cellxgene-census-public/cell-census/<code>[tag]</code>/soma/</td>
<td rowspan="2">s3://cellxgene-census-public-us-west-2/cell-census/<code>[tag]</code>/soma/</td>
<td rowspan="3">us-west-2</td>
</tr>
<tr>
Expand All @@ -42,7 +42,7 @@ The single-cell data from CZ CELLxGENE Discover included in Census (see [inclusi
<td rowspan"><a href="https://anndata.readthedocs.io/en/latest/fileformat-prose.html#elements">H5AD</a></td>
<td><a href="https://anndata.readthedocs.io/en/latest/index.html">AnnData</a></td>
<td rowspan><a href="https://github.com/chanzuckerberg/single-cell-curation/tree/main/schema">CZ CELLxGENE Discover <b>Dataset</b> Schema</a></td>
<td rowspan>s3://cellxgene-census-public/cell-census/<code>[tag]</code>/h5ads/</td>
<td rowspan>s3://cellxgene-census-public-us-west-2/cell-census/<code>[tag]</code>/h5ads/</td>
</tr>
</tbody>
</table>
Expand Down Expand Up @@ -71,13 +71,13 @@ Users can bulk-donwload Census data via the [AWS CLI](https://aws.amazon.com/cli
For example, to download the H5ADs files of the Census LTS release `2023-07-25`, users can execute the following from a shell session:

```bash
aws s3 sync --no-sign-request s3://cellxgene-census-public/cell-census/2023-07-25/h5ads/ ./h5ads/
aws s3 sync --no-sign-request s3://cellxgene-census-public-us-west-2/cell-census/2023-07-25/h5ads/ ./h5ads/
```

And to download the TileDB files:

```bash
aws s3 sync --no-sign-request s3:/cellxgene-census-public/cell-census/2023-07-25/soma/ ./soma/
aws s3 sync --no-sign-request s3:/cellxgene-census-public-us-west-2/cell-census/2023-07-25/soma/ ./soma/
```

### CELLxGENE Census API (Python and R)
Expand Down Expand Up @@ -122,7 +122,7 @@ config = {
ctx = tiledbsoma.options.SOMATileDBContext()
ctx = ctx.replace(tiledb_config=config)

uri = "s3://cellxgene-census-public/cell-census/2023-07-25/soma/"
uri = "s3://cellxgene-census-public-us-west-2/cell-census/2023-07-25/soma/"

with tiledbsoma.open(uri, context=ctx) as census:
cell_metadata = census["census_data"]["homo_sapiens"].obs.read(
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