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A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.

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cgkournelos/parallel-smith-waterman

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parallel-smith-waterman

A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.

There three different aproaches:

  • Serial (the standard implementation for taking measuerments as a baseline)
  • Parallel using OpenMP library
  • Parallel OpenMP with Vectorization

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A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.

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