Merge pull request #268 from catalystneuro/generalize_get_source_schema

generalized get_source_schema() across all interfaces

nwb_conversion_tools/basedatainterface.py

@@ -8,7 +8,7 @@
 class BaseDataInterface(ABC):
     @classmethod
     def get_source_schema(cls):
-        return get_base_schema()
+        return get_schema_from_method_signature(cls.__init__, exclude=["source_data"])
 
     @classmethod
     def get_conversion_options_schema(cls):

nwb_conversion_tools/datainterfaces/behavior/movie/moviedatainterface.py

@@ -42,10 +42,6 @@ def __init__(self, file_paths: list):
         assert HAVE_OPENCV, INSTALL_MESSAGE
         super().__init__(file_paths=file_paths)
 
-    @classmethod
-    def get_source_schema(cls):
-        return get_schema_from_method_signature(cls.__init__)
-
     def run_conversion(
         self,
         nwbfile: NWBFile,

nwb_conversion_tools/datainterfaces/ecephys/baserecordingextractorinterface.py

@@ -23,11 +23,6 @@ class BaseRecordingExtractorInterface(BaseDataInterface, ABC):
 
     RX = None
 
-    @classmethod
-    def get_source_schema(cls):
-        """Compile input schema for the RecordingExtractor."""
-        return get_schema_from_method_signature(cls.__init__)
-
     def __init__(self, **source_data):
         super().__init__(**source_data)
         self.recording_extractor = self.RX(**source_data)

nwb_conversion_tools/datainterfaces/ecephys/basesortingextractorinterface.py

@@ -15,11 +15,6 @@ class BaseSortingExtractorInterface(BaseDataInterface, ABC):
 
     SX = None
 
-    @classmethod
-    def get_source_schema(cls):
-        """Compile input schema for the SortingExtractor."""
-        return get_schema_from_method_signature(cls.__init__)
-
     def __init__(self, **source_data):
         super().__init__(**source_data)
         self.sorting_extractor = self.SX(**source_data)

nwb_conversion_tools/datainterfaces/ophys/baseimagingextractorinterface.py

@@ -16,10 +16,6 @@
 class BaseImagingExtractorInterface(BaseDataInterface):
     IX = None
 
-    @classmethod
-    def get_source_schema(cls):
-        return get_schema_from_method_signature(cls.__init__)
-
     def __init__(self, **source_data):
         super().__init__(**source_data)
         self.imaging_extractor = self.IX(**source_data)

nwb_conversion_tools/datainterfaces/ophys/basesegmentationextractorinterface.py

@@ -18,10 +18,6 @@
 class BaseSegmentationExtractorInterface(BaseDataInterface, ABC):
     SegX = None
 
-    @classmethod
-    def get_source_schema(cls):
-        return get_schema_from_method_signature(cls.__init__)
-
     def __init__(self, **source_data):
         super().__init__(**source_data)
         self.segmentation_extractor = self.SegX(**source_data)