Merge branch 'hotfix/1.1.1'

env.yml

@@ -5,7 +5,6 @@ name: helmsman-environment
 channels:
   - conda-forge
   - bioconda
-  - r
 dependencies:
   - python
   - numpy
@@ -16,24 +15,11 @@ dependencies:
   - biopython
   - colorama
   - cyvcf2=0.8
-  - pyfaidx=0.5
+  - pyfaidx=0.5.4
   - joblib=0.11
   - gcc_linux-64
   - gxx_linux-64
   - gfortran_linux-64
-#   - r-base=3.4.2
-#   - r-irkernel=0.8
-#   - r-devtools=1.13
-#   - r-tidyverse=1.1
-#   - r-ggally
-#   - r-shiny=1.0
-#   - r-rcurl=1.95
-#   - r-yaml
-#   - r-knitr
-#   - r-rmarkdown=1.6
-#   - r-viridis
-#   - r-RColorBrewer
   - bcftools=1.6
-#   - pandoc=1.19
   - pip:
     - nimfa==1.3.2