MAINT: Fixing L5 Biophysics cell params input and gui test cases

brown-ccv · Jul 10, 2024 · cf3e0cc · cf3e0cc
1 parent 651308d
commit cf3e0cc
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Showing 2 changed files with 16 additions and 13 deletions.
diff --git a/hnn_core/gui/gui.py b/hnn_core/gui/gui.py
@@ -1879,17 +1879,17 @@ def update_L5_biophysics_cell_params(net, cell_param_key, param_list):
 
     # dendrites
     mechs_params['hh2'] = {
-        'gkbar_hh2': param_list[9].value,
-        'gnabar_hh2': param_list[10].value,
-        'el_hh2': param_list[11].value,
-        'gl_hh2': param_list[12].value}
-
-    mechs_params['ca'] = {'gbar_ca': param_list[13].value}
-    mechs_params['cad'] = {'taur_cad': param_list[14].value}
-    mechs_params['kca'] = {'gbar_kca': param_list[15].value}
-    mechs_params['km'] = {'gbar_km': param_list[16].value}
-    mechs_params['cat'] = {'gbar_cat': param_list[17].value}
-    mechs_params['ar'] = {'gbar_ar': param_list[18].value}
+        'gkbar_hh2': param_list[10].value,
+        'gnabar_hh2': param_list[11].value,
+        'el_hh2': param_list[12].value,
+        'gl_hh2': param_list[13].value}
+
+    mechs_params['ca'] = {'gbar_ca': param_list[14].value}
+    mechs_params['cad'] = {'taur_cad': param_list[15].value}
+    mechs_params['kca'] = {'gbar_kca': param_list[16].value}
+    mechs_params['km'] = {'gbar_km': param_list[17].value}
+    mechs_params['cat'] = {'gbar_cat': param_list[18].value}
+    mechs_params['ar'] = {'gbar_ar': param_list[19].value}
 
     update_common_dendrite_sections(sections, mechs_params)
 

diff --git a/hnn_core/tests/test_gui.py b/hnn_core/tests/test_gui.py
@@ -165,6 +165,7 @@ def test_gui_change_connectivity():
                                            _single_simulation,
                                            gui.drive_widgets,
                                            gui.connectivity_widgets,
+                                           gui.cell_pameters_widgets,
                                            add_drive=False)
 
                 # test if the new value is reflected in the network
@@ -203,7 +204,8 @@ def test_gui_init_network():
     _single_simulation['net'] = jones_2009_model(gui.params)
     _init_network_from_widgets(gui.params, gui.widget_dt, gui.widget_tstop,
                                _single_simulation, gui.drive_widgets,
-                               gui.connectivity_widgets)
+                               gui.connectivity_widgets,
+                               gui.cell_pameters_widgets)
     plt.close('all')
 
     # copied from test_network.py
@@ -657,6 +659,7 @@ def test_gui_add_tonic_input(setup_gui):
     # Add tonic bias to the simulation
     _init_network_from_widgets(gui.params, gui.widget_dt, gui.widget_tstop,
                                _single_simulation, gui.drive_widgets,
-                               gui.connectivity_widgets)
+                               gui.connectivity_widgets,
+                               gui.cell_pameters_widgets)
 
     assert _single_simulation['net'].external_biases['tonic'] is not None