Skip to content

Commit

Permalink
Remove links.
Browse files Browse the repository at this point in the history
  • Loading branch information
VJalili committed Sep 13, 2024
1 parent 2ab676e commit fdb33ab
Showing 1 changed file with 10 additions and 8 deletions.
18 changes: 10 additions & 8 deletions website/docs/modules/gather_batch_evidence.md
Original file line number Diff line number Diff line change
Expand Up @@ -181,14 +181,16 @@ latest images from [this file](https://github.com/broadinstitute/gatk-sv/blob/ma

#### Static inputs

```json
"primary_contigs_fai": "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/contig.fai",
"cytoband": "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/cytobands_hg38.bed.gz",
"ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict",
"mei_bed": "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/mei_hg38.bed.gz",
"genome_file": "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/hg38.genome",
"sd_locs_vcf": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dbsnp138.vcf"
```
You may refer to [this reference file](https://github.com/broadinstitute/gatk-sv/blob/main/inputs/values/resources_hg38.json)
for values of the following inputs.

- `primary_contigs_fai`;
- `cytoband`;
- `ref_dict`;
- `mei_bed`;
- `genome_file`;
- `sd_locs_vcf`.


#### Optional Inputs
The following is the list of a few optional inputs of the
Expand Down

0 comments on commit fdb33ab

Please sign in to comment.