bioindex util constant for the list of all trait groups

broadinstitute · Dec 10, 2024 · dca8362 · dca8362
1 parent a1d585f
commit dca8362
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/src/utils/bioIndexUtils.js b/src/utils/bioIndexUtils.js
@@ -141,6 +141,7 @@ async function processRequest(req, onResolve, onError, onLoad, limitWhile) {
 export const DEFAULT_SIGMA = 2;
 export const DEFAULT_GENESET_SIZE = "small";
 export const DEFAULT_TRAIT_GROUP = "all";
+export const TRAIT_GROUPS = ["portal", "gcat_trait", "rare_v2"];
 
 export default {
     query,
@@ -152,5 +153,6 @@ export default {
     BIO_INDEX_HOST_PRIVATE,
     DEFAULT_SIGMA,
     DEFAULT_GENESET_SIZE,
-    DEFAULT_TRAIT_GROUP
+    DEFAULT_TRAIT_GROUP,
+    TRAIT_GROUPS
 };
diff --git a/src/views/PIGEAN/Gene/store.js b/src/views/PIGEAN/Gene/store.js
@@ -92,10 +92,9 @@ export default new Vuex.Store({
                     context.commit("setPhewasData", context.state.pigeanGene.data);
                 } else {
                     // If ALL is selected, query all trait groups and get top results across all
-                    const TRAIT_GROUPS = ["portal", "gcat_trait", "rare_v2"];
                     let traitsData = [];
-                    for (let i = 0; i < TRAIT_GROUPS.length; i++){
-                        let group = TRAIT_GROUPS[i];
+                    for (let i = 0; i < bioIndexUtils.TRAIT_GROUPS.length; i++){
+                        let group = bioIndexUtils.TRAIT_GROUPS[i];
                         let traitQuery = `${group},${context.state.geneName},${
                             bioIndexUtils.DEFAULT_SIGMA},${context.state.genesetSize}`;
                         let groupData = await bioIndexUtils.query("pigean-gene", traitQuery);

diff --git a/src/views/PIGEAN/GeneSet/store.js b/src/views/PIGEAN/GeneSet/store.js
@@ -64,10 +64,9 @@ export default new Vuex.Store({
                 context.commit("setPhewasData", context.state.pigeanGeneset.data);
             } else {
                 // If ALL is selected, query all trait groups and get top results across all
-                const TRAIT_GROUPS = ["portal", "gcat_trait", "rare_v2"];
                 let traitsData = [];
-                for (let i = 0; i < TRAIT_GROUPS.length; i++){
-                    let group = TRAIT_GROUPS[i];
+                for (let i = 0; i < bioIndexUtils.TRAIT_GROUPS.length; i++){
+                    let group = bioIndexUtils.TRAIT_GROUPS[i];
                     let traitQuery = `${group},${name},${
                         bioIndexUtils.DEFAULT_SIGMA},${genesetSize}`;
                     let groupData = await bioIndexUtils.query("pigean-gene-set", traitQuery);