fixed mistake where patient_id not being populated

broadinstitute · Jan 17, 2025 · e6700ac · e6700ac
1 parent 4cf2e34
commit e6700ac
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diff --git a/portal-backend/loader/depmap_model_loader.py b/portal-backend/loader/depmap_model_loader.py
@@ -58,6 +58,7 @@ def insert_cell_lines(df):
         public_comments = _coerce_na(row["PublicComments"])
         age_category = _coerce_na(row["AgeCategory"])
         ccle_name = _coerce_na(row["CCLEName"])
+        patient_id = _coerce_na(row["PatientID"])
 
         json_encoded_metadata = json.dumps({k: _coerce_na(v) for k, v in row.items()})
 

diff --git a/portal-backend/pyright-ratchet-errors.txt b/portal-backend/pyright-ratchet-errors.txt
@@ -573,7 +573,6 @@ test_views.py: error: "__getitem__" method not defined on type "LazyAttribute" (
 test_views.py: error: "__getitem__" method not defined on type "Sequence" (reportIndexIssue)
 test_views.py: error: "display_name" is not a known member of "None" (reportOptionalMemberAccess)
 test_views.py: error: Argument of type "Sequence" cannot be assigned to parameter "feature" of type "str | int" in function "get_id_from_dataset_feature"
-test_views.py: error: Argument of type "dict[Sequence, float]" cannot be assigned to parameter "src_dict" of type "Dict[str, Any]" in function "from_dict"
 test_views.py: error: Argument of type "str" cannot be assigned to parameter "__value" of type "int" in function "index"
 test_views.py: error: Cannot access member "entity_id" for type "CompoundDoseFactory"
 test_views.py: error: Cannot access member "entity_id" for type "CompoundDoseReplicateFactory"