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required updates for creating Ensembl v111 databases #28

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8 changes: 4 additions & 4 deletions pom.xml
Original file line number Diff line number Diff line change
@@ -69,22 +69,22 @@
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.bio</artifactId>
<version>3.0.6</version>
<version>3.0.27</version>
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</dependency>
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.rdb</artifactId>
<version>3.0.6</version>
<version>3.0.27</version>
</dependency>
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.rdb.construct</artifactId>
<version>3.0.6</version>
<version>3.0.27</version>
</dependency>
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.tools.qc</artifactId>
<version>3.0.6</version>
<version>3.0.27</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
4 changes: 2 additions & 2 deletions src/main/java/org/bridgedb/creator/DbBuilder.java
Original file line number Diff line number Diff line change
@@ -41,7 +41,7 @@
import org.bridgedb.rdb.construct.DBConnector;
import org.bridgedb.rdb.construct.DataDerby;
import org.bridgedb.rdb.construct.GdbConstruct;
import org.bridgedb.rdb.construct.GdbConstructImpl4;
import org.bridgedb.rdb.construct.GdbConstructImpl3;

/**
* The class that performs the actual work on the database, used by
@@ -71,7 +71,7 @@ public DbBuilder(BridgeDbCreator creator) {
* @throws IDMapperException when it cannot write to the output file
*/
public void createNewDb() throws IDMapperException {
newDb = new GdbConstructImpl4(creator.getOutputFilePath(), new DataDerby(), DBConnector.PROP_RECREATE);
newDb = new GdbConstructImpl3(creator.getOutputFilePath(), new DataDerby(), DBConnector.PROP_RECREATE);
newDb.createGdbTables();
newDb.preInsert();

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