Update project artifacts

bridge2ai · Dec 17, 2024 · 1b91749 · 1b91749
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diff --git a/docs/UseCase.md b/docs/UseCase.md
@@ -124,7 +124,7 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:UseCase](https://w3id.org
           
     
     
-    UseCase --> "1" UseCaseCategory : use_case_category
+    UseCase --> "1..*" UseCaseCategory : use_case_category
     click UseCaseCategory href "../UseCaseCategory"
 
         
@@ -147,17 +147,17 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:UseCase](https://w3id.org
 
 | Name | Cardinality and Range | Description | Inheritance |
 | ---  | --- | --- | --- |
-| [use_case_category](use_case_category.md) | 1 <br/> [UseCaseCategory](UseCaseCategory.md) | Category of the UseCase | direct |
+| [use_case_category](use_case_category.md) | 1..* <br/> [UseCaseCategory](UseCaseCategory.md) | Category of the UseCase | direct |
 | [known_limitations](known_limitations.md) | 0..1 <br/> [String](String.md) | Any current obstacles to implementing this use case | direct |
 | [relevance_to_dgps](relevance_to_dgps.md) | * <br/> [DataGeneratingProject](DataGeneratingProject.md) | Relevance of the use case to one or more DGPs | direct |
 | [data_topics](data_topics.md) | * <br/> [DataTopic](DataTopic.md) | Relevance of the use case to one or more data topics | direct |
 | [data_substrates](data_substrates.md) | * <br/> [DataSubstrate](DataSubstrate.md) | Relevance of the use case to one or more data substrates | direct |
 | [standards_and_tools_for_dgp_use](standards_and_tools_for_dgp_use.md) | * <br/> [DataStandardOrTool](DataStandardOrTool.md) | List of identifiers of standards and tools; those planned to be used, or alre... | direct |
 | [alternative_standards_and_tools](alternative_standards_and_tools.md) | * <br/> [DataStandardOrTool](DataStandardOrTool.md) | List of identifiers of standards and tools; those not explicitly planned to b... | direct |
-| [enables](enables.md) | * <br/> [UseCase](UseCase.md) | Other use case(s) this use case supports or makes possible | direct |
+| [enables](enables.md) | * <br/> [UseCase](UseCase.md) | List of other use case(s) this use case supports or makes possible | direct |
 | [involved_in_experimental_design](involved_in_experimental_design.md) | 0..1 <br/> [Boolean](Boolean.md) | True if use case is likely to be implemented as part of an experimental proce... | direct |
 | [involved_in_metadata_management](involved_in_metadata_management.md) | 0..1 <br/> [Boolean](Boolean.md) | True if use case is likely to be implemented as part of metadata indexing, sa... | direct |
-| [involved_in_quality_control](involved_in_quality_control.md) | 0..1 <br/> [Boolean](Boolean.md) | True is use case is likely to be implemented as part of data validation opera... | direct |
+| [involved_in_quality_control](involved_in_quality_control.md) | 0..1 <br/> [Boolean](Boolean.md) | A value of True indicates a use case is likely to be implemented as part of d... | direct |
 | [xref](xref.md) | * <br/> [Uriorcurie](Uriorcurie.md) | URI of corresponding class in an ontology of experimental procedures, in CURI... | direct |
 | [id](id.md) | 1 <br/> [Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) |
 | [category](category.md) | 0..1 <br/> [CategoryType](CategoryType.md) | Name of the high level ontology class in which this entity is categorized | [NamedThing](NamedThing.md) |
@@ -264,7 +264,7 @@ attributes:
   use_case_category:
     name: use_case_category
     description: Category of the UseCase. Not all projects will incorporate use cases
-      in all categories.
+      in all categories. This is multivalued, as a use case may span categories.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: node_property
@@ -275,6 +275,7 @@ attributes:
     - UseCase
     range: UseCaseCategory
     required: true
+    multivalued: true
   known_limitations:
     name: known_limitations
     description: Any current obstacles to implementing this use case. This could be
@@ -330,8 +331,8 @@ attributes:
     name: standards_and_tools_for_dgp_use
     description: List of identifiers of standards and tools; those planned to be used,
       or already in use, by one or more Bridge2AI DGPs in addressing this use case,
-      from those in the Standards Registry, or TBD if standards/tools not yet finalized
-      for this use case.
+      from those in the Standards Registry. If no value is provided here, the use
+      case may not have a direct relationship to a standard or tool.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: node_property
@@ -359,7 +360,7 @@ attributes:
     multivalued: true
   enables:
     name: enables
-    description: Other use case(s) this use case supports or makes possible.
+    description: List of other use case(s) this use case supports or makes possible.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: node_property
@@ -399,8 +400,8 @@ attributes:
     range: boolean
   involved_in_quality_control:
     name: involved_in_quality_control
-    description: True is use case is likely to be implemented as part of data validation
-      operations.
+    description: A value of True indicates a use case is likely to be implemented
+      as part of data validation operations.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: node_property

diff --git a/docs/UseCaseCategory.md b/docs/UseCaseCategory.md
@@ -3,7 +3,7 @@
 
 
 
-_Category of use case._
+_Category of use case. These define the high-level purpose of a task or activity as part of a broader research effort or other data-related project. They are not mutually exclusive and one use case may involve multiple categories._
 
 
 
@@ -57,28 +57,40 @@ URI: [UseCaseCategory](UseCaseCategory.md)
 <details>
 ```yaml
 name: UseCaseCategory
-description: Category of use case.
+description: Category of use case. These define the high-level purpose of a task or
+  activity as part of a broader research effort or other data-related project. They
+  are not mutually exclusive and one use case may involve multiple categories.
 from_schema: https://w3id.org/bridge2ai/standards-schema-all
 rank: 1000
 permissible_values:
   acquisition:
     text: acquisition
-    description: Acquisition
+    description: Acquisition. The use case involves the collection of data from one
+      or more sources, including data generation, data capture, and data entry.
   integration:
     text: integration
-    description: Integration
+    description: Integration. The use case involves the combination of data from multiple
+      sources, including data harmonization, data linkage, and data aggregation.
   standardization:
     text: standardization
-    description: Standardization
+    description: Standardization. The use case involves the application of standards
+      to data, including data normalization, data validation, and quality control.
   modeling:
     text: modeling
-    description: Modeling
+    description: Modeling. The use case involves the development of models, including
+      predictive models, statistical models, and machine learning models.
   application:
     text: application
-    description: Application
+    description: Application. The use case involves the use of data for a specific
+      scientific or otherwise productive purpose, including data analysis, data visualization,
+      and data interpretation. This also includes clinical decision support, patient
+      care, and other applications of data in a biomedical context.
   assessment:
     text: assessment
-    description: Assessment
+    description: Assessment. The use case involves the evaluation of data quality,
+      data provenance, and data utility, including the assessment of standards, data
+      tools, and data resources. Note this differs from the standardization category,
+      which involves the application of standards to data.
 
 ```
 </details>
diff --git a/docs/UseCaseContainer.md b/docs/UseCaseContainer.md
@@ -108,7 +108,7 @@ from_schema: https://w3id.org/bridge2ai/standards-schema-all
 attributes:
   use_cases:
     name: use_cases
-    description: Collection of associated use cases
+    description: Collection of associated use cases.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     alias: use_cases

diff --git a/docs/category.md b/docs/category.md
@@ -28,22 +28,22 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:category](https://w3id.or
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
+| [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
+| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
+| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [Organization](Organization.md) | Represents a group or organization related to or responsible for one or more ... |  no  |
+| [UseCase](UseCase.md) | Represents a use case for Bridge2AI standards |  no  |
+| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
+| [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
+| [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
+| [NamedThing](NamedThing.md) | A generic grouping for any identifiable entity |  no  |
 | [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
+| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
 | [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
-| [DataTopic](DataTopic.md) | Represents a general data topic for Bridge2AI data or the tools/standards app... |  no  |
-| [NamedThing](NamedThing.md) | A generic grouping for any identifiable entity |  no  |
-| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
 | [DataSubstrate](DataSubstrate.md) | Represents a data substrate for Bridge2AI data |  no  |
+| [DataTopic](DataTopic.md) | Represents a general data topic for Bridge2AI data or the tools/standards app... |  no  |
 | [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
-| [Organization](Organization.md) | Represents a group or organization related to or responsible for one or more ... |  no  |
-| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
-| [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
-| [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
-| [UseCase](UseCase.md) | Represents a use case for Bridge2AI standards |  no  |
 | [AnatomicalEntity](AnatomicalEntity.md) | A subcellular location, cell type or gross anatomical part |  no  |
-| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
 
 
 

diff --git a/docs/collection.md b/docs/collection.md
@@ -28,16 +28,16 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:collection](https://w3id.
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-| [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
-| [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
-| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
-| [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
-| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
 | [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
+| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
+| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
 | [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
 | [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
-| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
+| [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
+| [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
+| [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
 
 
 

diff --git a/docs/concerns_data_topic.md b/docs/concerns_data_topic.md
@@ -28,16 +28,16 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:concerns_data_topic](http
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-| [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
-| [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
-| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
-| [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
-| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
 | [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
+| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
+| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
 | [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
 | [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
-| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
+| [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
+| [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
+| [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
 
 
 

diff --git a/docs/contribution_date.md b/docs/contribution_date.md
@@ -28,22 +28,22 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:contribution_date](https:
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
+| [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
+| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
+| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |
+| [Organization](Organization.md) | Represents a group or organization related to or responsible for one or more ... |  no  |
+| [UseCase](UseCase.md) | Represents a use case for Bridge2AI standards |  no  |
+| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
+| [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
+| [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
+| [NamedThing](NamedThing.md) | A generic grouping for any identifiable entity |  no  |
 | [ReferenceDataOrDataset](ReferenceDataOrDataset.md) | Represents a resource in the Bridge2AI Standards Registry serving as a standa... |  no  |
+| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
 | [DataStandard](DataStandard.md) | Represents a general purpose standard in the Bridge2AI Standards Registry |  no  |
-| [DataTopic](DataTopic.md) | Represents a general data topic for Bridge2AI data or the tools/standards app... |  no  |
-| [NamedThing](NamedThing.md) | A generic grouping for any identifiable entity |  no  |
-| [SoftwareOrTool](SoftwareOrTool.md) | Represents a piece of software or computational tool in the Bridge2AI Standar... |  no  |
 | [DataSubstrate](DataSubstrate.md) | Represents a data substrate for Bridge2AI data |  no  |
+| [DataTopic](DataTopic.md) | Represents a general data topic for Bridge2AI data or the tools/standards app... |  no  |
 | [DataStandardOrTool](DataStandardOrTool.md) | Represents a standard or tool in the Bridge2AI Standards Registry |  no  |
-| [Organization](Organization.md) | Represents a group or organization related to or responsible for one or more ... |  no  |
-| [OntologyOrVocabulary](OntologyOrVocabulary.md) | A set of concepts and categories, potentially defined or accompanied by their... |  no  |
-| [Registry](Registry.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [TrainingProgram](TrainingProgram.md) | Represents a training program for skills and experience related to standards ... |  no  |
-| [ModelRepository](ModelRepository.md) | Represents a resource in the Bridge2AI Standards Registry serving to curate a... |  no  |
-| [ReferenceImplementation](ReferenceImplementation.md) | Represents an implementation of one or more standards or tools in the Bridge2... |  no  |
-| [UseCase](UseCase.md) | Represents a use case for Bridge2AI standards |  no  |
 | [AnatomicalEntity](AnatomicalEntity.md) | A subcellular location, cell type or gross anatomical part |  no  |
-| [BiomedicalStandard](BiomedicalStandard.md) | Represents a standard in the Bridge2AI Standards Registry with particular app... |  no  |