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@brentp brentp released this 22 Apr 21:58
· 25 commits to master since this release
v0.1.3
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Learn about vigilant mode.

this release has minor changes to the way that SVs are annotated with SNPs (to indicate LOH). It also comes with a static binary.

v0.1.3

  • add DUPHOLD_SAMPLE_NAME environment variable as a way to set the sample name. (#19)
  • re-vamp SNP stuff so that only DHGT is reported. It is an Integer with 5 columns for numbers of
    0. hom-ref 1. het 2. hom-alt 3. unknown 4. low-quality snp variants within each event.

Installation

  • The binary duphold_static is the recommended way to use duphold. It is a static binary with no dependencies and will work for nearly all uses.
  • The binary duphold_shared depends on libhts.so for cases when a user wants to access bam/cram /vcf directly over S3 or https.
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