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[RF] refactor ezBIDS core #113

Merged
merged 8 commits into from
Feb 15, 2024
Merged

[RF] refactor ezBIDS core #113

merged 8 commits into from
Feb 15, 2024

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dlevitas
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@dlevitas dlevitas commented Feb 9, 2024

The main purpose of this PR is to improve how imaging data is detected. Currently, when DICOM files aren't present, we reply on the existence of the JSON metadata files (either provided by dcm2niix, other software, or manually created) for detecting imaging data. This approach should be inverted, where we check for the existence of the actual image files (i.e. NIfTI). Furthermore, the BIDS specification doesn't require metadata for all datatypes, such as anat sequences. Even under scenarios where there are no corresponding JSON metadata files yet specific metadata is required, our recent metadata support guides users to provide this information.

This PR will therefore be most relevant in situations where only NIfTI files are provided, a not entirely uncommon case.

@dlevitas dlevitas merged commit 83f771a into master Feb 15, 2024
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@dlevitas dlevitas deleted the rf/ezbids_core branch February 15, 2024 22:33
@dlevitas dlevitas changed the title [RF] WIP: refactor ezBIDS core [RF] refactor ezBIDS core Feb 15, 2024
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