small changes

dev.sh

@@ -47,29 +47,29 @@ export SINGULARITY_CACHEDIR=/tmp
 #   chmod -R 770 $PWD/mongodb/data/db
 # fi
 
-if [ ! -f $PWD/mongodb/mongodb.sif ]; then # Will eventually be redundant and can remove
-    echo "building mongodb"
-    # build image
-    singularity build           \
-      --arch "amd64"            \
-      --fakeroot                \
-      --disable-cache           \
-      $PWD/mongodb/mongodb.sif  \
-      $PWD/mongodb/Singularity
+# if [ ! -f $PWD/mongodb/mongodb.sif ]; then # Will eventually be redundant and can remove
+#     echo "building mongodb"
+#     # build image
+#     singularity build           \
+#       --arch "amd64"            \
+#       --fakeroot                \
+#       --disable-cache           \
+#       $PWD/mongodb/mongodb.sif  \
+#       $PWD/mongodb/Singularity
 
-    # start the container instance
-    singularity instance start  \
-      --fakeroot                \
-      --bind $PWD/mongodb/data/db:/data/db \
-      $PWD/mongodb/mongodb.sif  \
-      brainlife_ezbids-mongodb
-
-
-      # --net \
-      # --network-args "portmap=27417:27017/tcp"  \
-      # --bind $PWD/data/db:/data/db \  # Might not need this if mongodb/Singularity contains a %files section
-    # singularity run instance://brainlife_ezbids-mongodb # This seems to run mongodb in the foreground, meaning can't move on to building other containers.
-fi
+#     # start the container instance
+#     singularity instance start  \
+#       --fakeroot                \
+#       --bind $PWD/mongodb/data/db:/data/db \
+#       $PWD/mongodb/mongodb.sif  \
+#       brainlife_ezbids-mongodb
+
+
+#       # --net \
+#       # --network-args "portmap=27417:27017/tcp"  \
+#       # --bind $PWD/data/db:/data/db \  # Might not need this if mongodb/Singularity contains a %files section
+#     # singularity run instance://brainlife_ezbids-mongodb # This seems to run mongodb in the foreground, meaning can't move on to building other containers.
+# fi
 
 # if [ ! -f $PWD/api/api.sif ]; then
 #     echo "building api"
@@ -93,10 +93,10 @@ fi
 
 
 
-# # Approach #2: singularity-compose 
+# Approach #2: singularity-compose 
 
-# # if [ ! -d $PWD/mongodb/data/db ]; then
-# #     mkdir -p $PWD/mongodb/data/db
-# #     chmod -R 770 $PWD/mongodb/data/db
-# # fi
-# singularity-compose --debug up --no-resolv
+# if [ ! -d $PWD/mongodb/data/db ]; then
+#     mkdir -p $PWD/mongodb/data/db
+#     chmod -R 770 $PWD/mongodb/data/db
+# fi
+singularity-compose --debug up --no-resolv

singularity-compose.yml

@@ -40,11 +40,10 @@ instances:
 
     mongodb:  # FOURTH ATTEMPT
         container_name: brainlife_ezbids-mongodb
-        image: docker://mongo:4.4.15
-        # build:
-        #     context: ./mongodb
-        #     options:
-        #         - fakeroot
+        build:
+            context: ./mongodb
+            options:
+                - fakeroot
         platform: linux/amd64
         volumes:
             - ./mongodb/data/db:/data/db