update workflow

.github/workflows/test_and_deploy.yml

@@ -9,65 +9,92 @@ on:
   pull_request:
   workflow_dispatch:
 
-concurrency:
-  # Cancel this workflow if it is running,
-  # and then changes are applied on top of the HEAD of the branch,
-  # triggering another run of the workflow
-  group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: true
+#concurrency:
+#  # Cancel this workflow if it is running,
+#  # and then changes are applied on top of the HEAD of the branch,
+#  # triggering another run of the workflow
+#  group: ${{ github.workflow }}-${{ github.ref }}
+#  cancel-in-progress: true
 
 jobs:
-  linting:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: neuroinformatics-unit/actions/lint@v2
-
-  manifest:
-    name: Check Manifest
-    runs-on: ubuntu-latest
-    steps:
-      - uses: neuroinformatics-unit/actions/check_manifest@v2
+#  linting:
+#    runs-on: ubuntu-latest
+#    steps:
+#      - uses: neuroinformatics-unit/actions/lint@v2
+#
+#  manifest:
+#    name: Check Manifest
+#    runs-on: ubuntu-latest
+#    steps:
+#      - uses: neuroinformatics-unit/actions/check_manifest@v2
 
   test:
-    needs: [linting, manifest]
+#    needs: [linting, manifest]
     name: ${{ matrix.os }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         # Run all supported Python versions on linux
-        python-version: ["3.9", "3.10", "3.11"]
+#        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.11" ]
         os: [ubuntu-latest]
         # Include one windows and macos run each of Intel/ARM
-        include:
-        - os: macos-13
-          python-version: "3.11"
-        - os: macos-latest
-          python-version: "3.11"
-        - os: windows-latest
-          python-version: "3.11"
+#        include:
+#        - os: macos-13
+#          python-version: "3.11"
+#        - os: macos-latest
+#          python-version: "3.11"
+#        - os: windows-latest
+#          python-version: "3.11"
 
     steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+
       - name: Install hdf5 libs for Mac
         if: runner.os == 'macOS'
         run: brew install hdf5
 
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install vedo
+          # Install other dependencies as needed
+
+      - name: Install Xvfb and additional dependencies on Ubuntu
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y xvfb libgl1-mesa-glx libosmesa6
+
+      - name: Set up Xvfb
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          Xvfb :99 -screen 0 1920x1080x24 &
+          export DISPLAY=:99
+
       # Helps set up VTK with a headless display
       - uses: pyvista/setup-headless-display-action@v2
         with:
           qt: true
 
-      # Sets up ffmpeg to we can run video tests on CI
+      # Sets up ffmpeg so we can run video tests on CI
       - uses: FedericoCarboni/setup-ffmpeg@v2
         if: matrix.os != 'macos-latest'
         id: setup-ffmpeg
 
-      - name: setup ffmpeg on latest Mac with brew
+      - name: Setup ffmpeg on latest Mac with brew
         if: matrix.os == 'macos-latest'
         run: brew install ffmpeg
 
-      # Run tests
-      - uses: neuroinformatics-unit/actions/test@v2
+      - name: Run tests
+        uses: neuroinformatics-unit/actions/test@v2
         with:
           python-version: ${{ matrix.python-version }}
           secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}
@@ -78,14 +105,13 @@ jobs:
     if: github.event_name == 'push' && github.ref_type == 'tag'
     runs-on: ubuntu-latest
     steps:
-    - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2
-
+      - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2
 
   upload_all:
     name: Publish build distributions
     needs: [build_sdist_wheels]
     runs-on: ubuntu-latest
     steps:
-    - uses: neuroinformatics-unit/actions/upload_pypi@v2
-      with:
-        secret-pypi-key: ${{ secrets.TWINE_API_KEY }}
+      - uses: neuroinformatics-unit/actions/upload_pypi@v2
+        with:
+          secret-pypi-key: ${{ secrets.TWINE_API_KEY }}