Code

Add all Kim's DevCCFv1 atlases#441

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Merged

alessandrofelder merged 18 commits intobrainglobe:mainbrainglobe/brainglobe-atlasapi:mainfrom carlocastoldi:maincarlocastoldi/brainglobe-atlasapi:mainCopy head branch name to clipboardJan 17, 2025

+413

Commits

Commits on Nov 25, 2024

• initial work to add Kim DevCCFv1 2024

  

  Carlo Castoldi

  committed
  826e74e

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• fix orientation and resolution

  

  Carlo Castoldi

  committed
  d981c91

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Commits on Dec 20, 2024

• DevCCFv1 atlases are now fetched online and generated for all timestamps

  carlocastoldi

  committed
  8b3783e

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Commits on Dec 21, 2024

• skip mesh creation if done already

  carlocastoldi

  committed
  d0addd9

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Commits on Jan 8, 2025

• removed unnecessary comments

  carlocastoldi

  committed
  fe48ca0

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• add options --timepoints and --modality to DevCCF

  carlocastoldi

  committed
  2cd62a6

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Commits on Jan 9, 2025

• add hashes to DevCCF

  carlocastoldi

  committed
  bc6efb9

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• last fixups for DevCCF

  carlocastoldi

  committed
  664206d

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• add option --decimate-fraction to DevCCF

  carlocastoldi

  committed
  99e2ea3

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• DevCCFv1 atlases are named as kim_devccf_mouse_<AGE>_<MODALITY>

  carlocastoldi

  committed
  9940865

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Commits on Jan 10, 2025

• set kim_devccf_mouse atlases as version=3 of kim_dev_mouse

  carlocastoldi

  committed
  e88313e

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

  committed
  454f144

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• make linter happy, remove unused code

  

  alessandrofelder

  authored and

  carlocastoldi

  committed
  61f69ea

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• set manifest to ignore atlas_generation/hashes

  carlocastoldi

  committed
  bf89e57

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

  committed
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Commits on Jan 11, 2025

• DevCCF: atlas files extracted with pooch.Unzip() are now correctly assigned

  

  Carlo Castoldi

  committed
  7fc9fde

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Commits on Jan 15, 2025

• fix reference images being badly converted to tiff

  

  Carlo Castoldi

  committed
  9358cf5

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• add option --cached-meshes to DevCCF

  

  Carlo Castoldi

  committed
  75a46ff

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