DevCCFv1 atlases are named as kim_devccf_mouse_<AGE>_<MODALITY>

brainglobe · Jan 9, 2025 · 9940865 · 9940865
1 parent 99e2ea3
commit 9940865
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_devccf_mouse.py b/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_devccf_mouse.py
@@ -253,15 +253,14 @@ def decimate_fraction_type(arg):
     timepoints = params["timepoints"]
     modality = params["modality"]
     decimate_fraction = params["decimate_fraction"]
-    atlas_name = f"{ATLAS_NAME}_{modality}"
-    bg_root_dir = DEFAULT_WORKDIR/atlas_name
+    bg_root_dir = DEFAULT_WORKDIR/ATLAS_NAME
     download_dir_path = bg_root_dir/"downloads"
     download_dir_path.mkdir(exist_ok=True, parents=True)
     pooch_ = pooch_init(download_dir_path, timepoints)
     structures = fetch_ontology(pooch_)
 
     for age in timepoints:
-        atlas_name = f"{atlas_name}_{age.replace('.', '-')}"
+        atlas_name = f"{ATLAS_NAME}_{age.replace('.', '-')}_{modality}"
         annotation_volume, reference_volume, resolution_um = fetch_animal(pooch_, age, modality)
         atlas_dir = bg_root_dir/atlas_name
         atlas_dir.mkdir(exist_ok=True)