adding happy belly paper, and modifying page footer to include links …

…to it

_includes/footer.html

@@ -15,8 +15,8 @@
             </div>
 
             <div class="footer-col footer-col-3">        
-                <p align="right"><b>{{ site.title | escape }}</b><br>
-                    <a href="https://zenodo.org/badge/latestdoi/103104314" target="_blank"><img src="https://zenodo.org/badge/103104314.svg" alt="DOI"></a>
+                <p align="right"><b><a href="/">{{ site.title | escape }}</a></b><br>
+                    <a style="border-width:0" href="https://doi.org/10.21105/jose.00053" target="_blank"><img src="https://jose.theoj.org/papers/10.21105/jose.00053/status.svg" alt="DOI"></a>
                 </p>
             </div>
             <div class="clear"></div>
@@ -25,8 +25,10 @@
                 <font size="-1">Have suggestions or ideas to improve anything here or add new content? Please feel free to <a href="https://github.com/AstrobioMike/AstrobioMike.github.io/issues" target="_blank">post an issue</a> 🙂</p>
 
             <hr style="height: .7em;"/>
-            <p align="center"><span><font size="-1">&copy; {{ site.time | date: '%Y' }} {{ site.author }}. Powered by <a href="http://jekyllrb.com" rel="nofollow">Jekyll</a>, built off of the <a href="https://github.com/jekyll/minima" rel="nofollow" target="_blank" >minima</a> template and components of <a href="http://merenlab.org" rel="nofollow" target="_blank">merenlab.org</a>.
+            <p align="center"><span><font size="-1">&copy; {{ site.time | date: '%Y' }} {{ site.author }}. Powered by <a href="http://jekyllrb.com" rel="nofollow" target="_blank">Jekyll</a>, built off of the <a href="https://github.com/jekyll/minima" rel="nofollow" target="_blank" >minima</a> template and components of <a href="http://merenlab.org" rel="nofollow" target="_blank">merenlab.org</a>.
             <br>Beginner or expert, join the <a href="https://t.co/3kAsD7qBJ0" target="_blank">Microbialomics</a> <a href="https://t.co/3kAsD7qBJ0" target="_blank"><img src="{{ site.url }}/images/Slack_icon.svg" style="height:1em"></a> group and feel free to post questions or tips!</font></span></p>
+
+            <p align="center"><span><font size="-1">If you've found this site useful and think it is appropriate to do so, please consider citing the <a href="https://jose.theoj.org/papers/10.21105/jose.00053" rel="nofollow" target="_blank">Happy Belly Bioinformatics paper</a> 🙂</font></span></p>
         </div>
     </div>
 </footer>

_includes/icon-github.html

@@ -1 +1 @@
-<a href="https://github.com/{{ include.username }}"><span class="icon icon--github">{% include icon-github.svg %}</span><span class="username">{{ include.username }}</span></a>
+<a href="https://github.com/{{ include.username }}" target="_blank"><span class="icon icon--github">{% include icon-github.svg %}</span>AstrobioMike</a>

_includes/icon-orcid.html

@@ -0,0 +1 @@
+<a href="https://orcid.org/0000-0001-7750-9145" target="_blank"><span class="icon icon--github"><img src="https://orcid.org/sites/default/files/images/orcid_16x16.png" style="width:1em;margin-right:.3em;"></span>Orcid: <span class="smaller">0000-0001-7750-9145</span></a>

research/index.md

@@ -11,9 +11,10 @@ permalink: /research/
 
 #### Bioinformatician exploring microbial ecology and evolution
 
-*Email:*   Mike.Lee(AT)nasa(DOT)gov  
+*Email:*   Mike.Lee@nasa.gov  
 {% include icon-twitter.html username=site.twitter_username %}  
-{% include _orcid.html %}  
+{% include icon-github.html username=site.github_username %}  
+{% include icon-orcid.html %}
 
 **Current position**  
 *NASA Space Biology Postdoctoral Fellow*
@@ -38,15 +39,20 @@ I'm a bioinformatician currently at NASA's Ames Research Center in northern Cali
 
 <div style="float: right; padding-left: 15px" class='altmetric-embed' data-badge-type='donut' data-link-target='_blank' data-doi="10.1101/512491"></div>  
 
-**Lee, M.D.** (2019). [GToTree: a user-friendly workflow for phylogenomics](https://doi.org/10.1093/bioinformatics/btz188){:target="_blank"}. *Bioinformatics*  
+**Lee, M.D.** (2019). [GToTree: a user-friendly workflow for phylogenomics](https://doi.org/10.1093/bioinformatics/btz188){:target="_blank"}. *Bioinformatics*.  
 [PDF download](https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btz188/28405135/btz188.pdf){:target="_blank"}  
 Software lives [here](https://github.com/AstrobioMike/GToTree){:target="_blank"}; documentation lives [here](https://github.com/AstrobioMike/GToTree/wiki){:target="_blank"}.  
 
 <div style="float: right; padding-left: 15px" class='altmetric-embed' data-badge-type='donut' data-link-target='_blank' data-doi="10.1177/1176934319862245"></div>  
 
-**Lee, M.D.** (2019). [Applications and considerations of GToTree: a user-friendly workflow for phylogenomics](https://doi.org/10.1177%2F1176934319862245){:target="_blank"}. *Evolutionary Bioinformatics*  
+**Lee, M.D.** (2019). [Applications and considerations of GToTree: a user-friendly workflow for phylogenomics](https://doi.org/10.1177%2F1176934319862245){:target="_blank"}. *Evolutionary Bioinformatics*.  
 [PDF download](https://journals.sagepub.com/doi/pdf/10.1177/1176934319862245){:target="_blank"}  
 
+<div style="float: right; padding-left: 15px" class='altmetric-embed' data-badge-type='donut' data-link-target='_blank' data-doi="10.21105/jose.00053"></div>  
+
+**Lee, M.D.** (2019). [Happy Belly Bioinformatics: an open-source resource dedicated to helping biologists utilize bioinformatics](https://doi.org/10.21105/jose.00053){:target="_blank"}. *The Journal of Open-Source Education*.  
+[PDF download](https://www.theoj.org/jose-papers/jose.00053/10.21105.jose.00053.pdf){:target="_blank"}
+
 <div style="float: right; padding-left: 15px" class='altmetric-embed' data-badge-type='donut' data-link-target='_blank' data-doi="10.1111/1462-2920.14552"></div>  
 
 **Lee, M.D.**, Ahlgren, N.A., Kling, J. D., Walworth, N.G., Rocap, G., Saito, M.A., Hutchins, D.A., and Webb, E.A. (2019). [Marine *Synechococcus* isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content](https://doi.org/10.1111/1462-2920.14552){:target="_blank"}. *Environmental Microbiology*.