Merge branch 'dev' of ssh://github.com/biosimulators/Biosimulators_ut…

…ils into dev
biosimulators · Dec 28, 2020 · 680d788 · 680d788
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diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1.19',
+    VERSION: '0.1.20',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/about.html b/docs/about.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>3. About BioSimulators utils &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>3. About BioSimulators utils &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
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@@ -17,7 +17,7 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="4. Index" href="genindex.html" />
-    <link rel="prev" title="2.1.12. biosimulators_utils.xml package" href="source/biosimulators_utils.xml.html" />
+    <link rel="prev" title="2.1.13. biosimulators_utils.xml package" href="source/biosimulators_utils.xml.html" />
 
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
 
@@ -77,7 +77,7 @@ <h3>Navigation</h3>
 <h3>Related Topics</h3>
 <ul>
   <li><a href="index.html">Documentation overview</a><ul>
-      <li>Previous: <a href="source/biosimulators_utils.xml.html" title="previous chapter"><span class="section-number">2.1.12. </span>biosimulators_utils.xml package</a></li>
+      <li>Previous: <a href="source/biosimulators_utils.xml.html" title="previous chapter"><span class="section-number">2.1.13. </span>biosimulators_utils.xml package</a></li>
       <li>Next: <a href="genindex.html" title="next chapter"><span class="section-number">4. </span>Index</a></li>
   </ul></li>
 </ul>

diff --git a/docs/genindex.html b/docs/genindex.html
diff --git a/docs/index.html b/docs/index.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -116,15 +116,16 @@ <h2>Contents<a class="headerlink" href="#contents" title="Permalink to this head
 <li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.archive.html">2.1.1. biosimulators_utils.archive package</a></li>
 <li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.biosimulations.html">2.1.2. biosimulators_utils.biosimulations package</a></li>
 <li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.combine.html">2.1.3. biosimulators_utils.combine package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.gh_action.html">2.1.4. biosimulators_utils.gh_action package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.kisao.html">2.1.5. biosimulators_utils.kisao package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.plot.html">2.1.6. biosimulators_utils.plot package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.report.html">2.1.7. biosimulators_utils.report package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.sedml.html">2.1.8. biosimulators_utils.sedml package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.simulator.html">2.1.9. biosimulators_utils.simulator package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.simulator_registry.html">2.1.10. biosimulators_utils.simulator_registry package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.utils.html">2.1.11. biosimulators_utils.utils package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.xml.html">2.1.12. biosimulators_utils.xml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.exec_status.html">2.1.4. biosimulators_utils.exec_status package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.gh_action.html">2.1.5. biosimulators_utils.gh_action package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.kisao.html">2.1.6. biosimulators_utils.kisao package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.plot.html">2.1.7. biosimulators_utils.plot package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.report.html">2.1.8. biosimulators_utils.report package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.sedml.html">2.1.9. biosimulators_utils.sedml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.simulator.html">2.1.10. biosimulators_utils.simulator package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.simulator_registry.html">2.1.11. biosimulators_utils.simulator_registry package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.utils.html">2.1.12. biosimulators_utils.utils package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="source/biosimulators_utils.xml.html">2.1.13. biosimulators_utils.xml package</a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="source/biosimulators_utils.html#submodules">2.2. Submodules</a></li>

diff --git a/docs/installation.html b/docs/installation.html
@@ -5,7 +5,7 @@
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     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>1. Installation instructions &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>1. Installation instructions &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
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     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators utils 0.1.20 documentation</title>
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     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
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        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/biosimulators_utils.combine.html#module-biosimulators_utils.combine.utils"><code class="xref">biosimulators_utils.combine.utils</code></a></td><td>
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        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/biosimulators_utils.exec_status.html#module-biosimulators_utils.exec_status"><code class="xref">biosimulators_utils.exec_status</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
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+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/biosimulators_utils.exec_status.html#module-biosimulators_utils.exec_status.utils"><code class="xref">biosimulators_utils.exec_status.utils</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
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        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/biosimulators_utils.plot.html#module-biosimulators_utils.plot.io"><code class="xref">biosimulators_utils.plot.io</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
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diff --git a/docs/search.html b/docs/search.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>Search &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
 

diff --git a/docs/searchindex.js b/docs/searchindex.js
diff --git a/docs/source/biosimulators_utils.archive.html b/docs/source/biosimulators_utils.archive.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.1. biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>2.1.1. biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
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@@ -55,15 +55,16 @@ <h3>Navigation</h3>
 <li class="toctree-l3 current"><a class="current reference internal" href="#">2.1.1. biosimulators_utils.archive package</a></li>
 <li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.biosimulations.html">2.1.2. biosimulators_utils.biosimulations package</a></li>
 <li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.combine.html">2.1.3. biosimulators_utils.combine package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.gh_action.html">2.1.4. biosimulators_utils.gh_action package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.kisao.html">2.1.5. biosimulators_utils.kisao package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.plot.html">2.1.6. biosimulators_utils.plot package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.report.html">2.1.7. biosimulators_utils.report package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.sedml.html">2.1.8. biosimulators_utils.sedml package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator.html">2.1.9. biosimulators_utils.simulator package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator_registry.html">2.1.10. biosimulators_utils.simulator_registry package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.utils.html">2.1.11. biosimulators_utils.utils package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.xml.html">2.1.12. biosimulators_utils.xml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.exec_status.html">2.1.4. biosimulators_utils.exec_status package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.gh_action.html">2.1.5. biosimulators_utils.gh_action package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.kisao.html">2.1.6. biosimulators_utils.kisao package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.plot.html">2.1.7. biosimulators_utils.plot package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.report.html">2.1.8. biosimulators_utils.report package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.sedml.html">2.1.9. biosimulators_utils.sedml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator.html">2.1.10. biosimulators_utils.simulator package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator_registry.html">2.1.11. biosimulators_utils.simulator_registry package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.utils.html">2.1.12. biosimulators_utils.utils package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.xml.html">2.1.13. biosimulators_utils.xml package</a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="biosimulators_utils.html#submodules">2.2. Submodules</a></li>

diff --git a/docs/source/biosimulators_utils.biosimulations.html b/docs/source/biosimulators_utils.biosimulations.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.2. biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.19 documentation</title>
+    <title>2.1.2. biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.20 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -55,15 +55,16 @@ <h3>Navigation</h3>
 <li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.archive.html">2.1.1. biosimulators_utils.archive package</a></li>
 <li class="toctree-l3 current"><a class="current reference internal" href="#">2.1.2. biosimulators_utils.biosimulations package</a></li>
 <li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.combine.html">2.1.3. biosimulators_utils.combine package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.gh_action.html">2.1.4. biosimulators_utils.gh_action package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.kisao.html">2.1.5. biosimulators_utils.kisao package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.plot.html">2.1.6. biosimulators_utils.plot package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.report.html">2.1.7. biosimulators_utils.report package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.sedml.html">2.1.8. biosimulators_utils.sedml package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator.html">2.1.9. biosimulators_utils.simulator package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator_registry.html">2.1.10. biosimulators_utils.simulator_registry package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.utils.html">2.1.11. biosimulators_utils.utils package</a></li>
-<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.xml.html">2.1.12. biosimulators_utils.xml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.exec_status.html">2.1.4. biosimulators_utils.exec_status package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.gh_action.html">2.1.5. biosimulators_utils.gh_action package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.kisao.html">2.1.6. biosimulators_utils.kisao package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.plot.html">2.1.7. biosimulators_utils.plot package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.report.html">2.1.8. biosimulators_utils.report package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.sedml.html">2.1.9. biosimulators_utils.sedml package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator.html">2.1.10. biosimulators_utils.simulator package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.simulator_registry.html">2.1.11. biosimulators_utils.simulator_registry package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.utils.html">2.1.12. biosimulators_utils.utils package</a></li>
+<li class="toctree-l3"><a class="reference internal" href="biosimulators_utils.xml.html">2.1.13. biosimulators_utils.xml package</a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="biosimulators_utils.html#submodules">2.2. Submodules</a></li>