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updating for refactoring validation in biosimulators-utils
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jonrkarr committed Apr 18, 2021
1 parent 64e071e commit c241f0b
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -14,7 +14,7 @@
# Base OS
FROM python:3.7.9-slim-buster

ARG VERSION="0.1.6"
ARG VERSION="0.1.7"
ARG SIMULATOR_VERSION="2.2.0"

# metadata
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2 changes: 1 addition & 1 deletion biosimulators_tellurium/_version.py
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@@ -1 +1 @@
__version__ = '0.1.6'
__version__ = '0.1.7'
2 changes: 1 addition & 1 deletion biosimulators_tellurium/core.py
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Expand Up @@ -126,7 +126,7 @@ def exec_sed_doc(filename, working_dir, base_out_path, rel_out_path=None,
doc.outputs.append(report)

filename_with_reports_for_plots = os.path.join(tmp_out_dir, 'simulation.sedml')
SedmlSimulationWriter().run(doc, filename_with_reports_for_plots)
SedmlSimulationWriter().run(doc, filename_with_reports_for_plots, validate_models_with_languages=False)

# Use tellurium to execute the SED document and generate the specified outputs
try:
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2 changes: 1 addition & 1 deletion requirements.txt
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@@ -1,3 +1,3 @@
biosimulators_utils[logging] >= 0.1.52
biosimulators_utils[logging] >= 0.1.53
pandas
tellurium

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