fixing KiSAO id for algorithm parameter

biosimulators · Jun 5, 2021 · 4162e66 · 4162e66
1 parent 6eb72cb
commit 4162e66
Show file tree

Hide file tree

Showing 5 changed files with 11 additions and 6 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -14,7 +14,7 @@
 # Base OS
 FROM python:3.9-slim-buster
 
-ARG VERSION="0.1.9"
+ARG VERSION="0.1.10"
 ARG SIMULATOR_VERSION="2.2.0"
 
 # metadata

diff --git a/biosimulators.json b/biosimulators.json
@@ -333,7 +333,7 @@
         {
           "kisaoId": {
             "namespace": "KISAO",
-            "id": "KISAO_0000107"
+            "id": "KISAO_0000656"
           },
           "id": "variable_step_size",
           "name": "Adaptive time steps",
@@ -460,7 +460,7 @@
       "parameters": [{
           "kisaoId": {
             "namespace": "KISAO",
-            "id": "KISAO_0000107"
+            "id": "KISAO_0000656"
           },
           "name": "Adaptive time steps",
           "type": "boolean",
@@ -572,7 +572,7 @@
         {
           "kisaoId": {
             "namespace": "KISAO",
-            "id": "KISAO_0000107"
+            "id": "KISAO_0000656"
           },
           "name": "Adaptive time steps",
           "type": "boolean",

diff --git a/biosimulators_tellurium/_version.py b/biosimulators_tellurium/_version.py
@@ -1 +1 @@
-__version__ = '0.1.9'
+__version__ = '0.1.10'
diff --git a/biosimulators_tellurium/core.py b/biosimulators_tellurium/core.py
@@ -21,6 +21,11 @@
 import shutil
 import tellurium
 import tempfile
+import tellurium.sedml.tesedml
+
+
+# correct KISAO to parameter mapping
+tellurium.sedml.tesedml.KISAOS_ALGORITHMPARAMETERS[656] = ('variable_step_size', bool)
 
 
 __all__ = ['exec_sedml_docs_in_combine_archive']

diff --git a/requirements.txt b/requirements.txt
@@ -1,3 +1,3 @@
-biosimulators_utils[logging] >= 0.1.80
+biosimulators_utils[logging] >= 0.1.81
 pandas
 tellurium