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feat: upgrade notebooks to run under python 3.11.6 #843

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feat: upgrade notebooks to run under python 3.11.6 #843

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57b9ee6
feat: upgrade notebooks to run under python 3.11.6
wholtz Oct 10, 2023
4adc223
chore: WIP get unit_test passing with py311 deps
wholtz Oct 10, 2023
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8 changes: 4 additions & 4 deletions docker/Dockerfile.shifter
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
FROM python:3.8-slim-bullseye
FROM python:3.11-slim-bookworm

RUN apt-get update \
&& apt-get install --yes --no-install-recommends \
"libxrender1=1:0.9.10-1" \
"libxext6=2:1.3.3-1.1" \
"git=1:2.30.2-1+deb11u2" \
"libxrender1=1:0.9.10-1.1" \
"libxext6=2:1.3.4-1+b1" \
"git=1:2.39.2-1.1" \
&& rm -rf /var/lib/apt/lists/*

COPY requirements.txt /requirements.txt
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34 changes: 34 additions & 0 deletions docker/requirements.in
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@@ -0,0 +1,34 @@
alembic
banal
black
colorama
dataset
dill
gspread
h5py
humanize
ipykernel
ipympl==0.9.3
ipysheet
ipywidgets
jupyter-client
jupyterlab
matchms
matplotlib
numpy
oauth2client
pandas
papermill
pip
pubchempy
pydantic
pymysql
pymzml
pyyaml
rdkit
scikit-learn
scipy
sqlalchemy
tables
tabulate
xlsxwriter
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