MicroHapulator 0.8

Added

• Filtering of reads with too many ambiguous bases (#165).
• Filtering of reads below a minumum length (#173).

Changed

• Smart handling of multiple markers at a single locus implemented for type and pipe (#158).
• Replaced parsers module with a MicrohapIndex class and supporting classes (#158).
• Numerous updates to the mhpl8r pipe HTML report
  • Replaced read length distubition histograms with ridge plots (#167).
  • Replaced read QC donut plots with a stacked bar chart (#168, #177).
  • Replaced FastQC report links with MultiQC link (#169).
  • Revised report text, added figure captions and table titles (#172).
  • Streamlined the Python code responsible for generating the report (#175, #177, #180).
• GRCh38 coordinates are now mandatory in marker definitions (#176).
• Jijna2 sub-templates added to handle differences in the report for single ended versus paired end reads (#179).

Fixed

• Bug with inconsistent sorting of read counts for interlocus balance (#159).
• Bug with counting repetitive reads (#163).
• Typing rate display in report (#174).