Merge pull request #69 from mortonjt/issue-68

Issue 68
biocore · Sep 17, 2019 · 9507d53 · 9507d53 · fedarko · Sep 17, 2019
2 parents cafce65 + 50a30dc
commit 9507d53
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,8 @@
 # songbird changelog
 
+## Version 0.9 (2019-9-5)
+Added compatibility with the new qiime2 differential type [#60](https://github.com/biocore/songbird/pull/60)
+
 ## Version 0.8.4 (2019-7-8)
 
 Minor release bump. Differential types are now inherited from q2 types.

diff --git a/scripts/songbird b/scripts/songbird
@@ -102,9 +102,11 @@ def multinomial(input_biom, metadata_file, formula, training_column,
 
     beta_ = clr(clr_inv(np.hstack((np.zeros((model.p, 1)), model.B))))
 
-    pd.DataFrame(
+    df = pd.DataFrame(
         beta_.T, columns=md_ids, index=obs_ids,
-    ).to_csv(os.path.join(summary_dir, 'differentials.tsv'), sep='\t')
+    )
+    df.index.name = 'featureid'
+    df.to_csv(os.path.join(summary_dir, 'differentials.tsv'), sep='\t')
 
 
 if __name__ == '__main__':

diff --git a/songbird/__init__.py b/songbird/__init__.py
@@ -1 +1 @@
-__version__ = "0.8.4"
+__version__ = "0.9"