Update sequence_processing_pipeline/templates/nuqc_job.sh

Co-authored-by: Daniel McDonald <[email protected]>
biocore · Jun 13, 2024 · 9bc835a · 9bc835a
1 parent 812ec82
commit 9bc835a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sequence_processing_pipeline/templates/nuqc_job.sh b/sequence_processing_pipeline/templates/nuqc_job.sh
@@ -76,7 +76,7 @@ function mux-runner () {
     id_map=${jobd}/id_map
     seqs_r1=${jobd}/seqs.r1.fastq
     seqs_r2=${jobd}/seqs.r2.fastq
-    r1_filt=${jobd}/seqs.r1.adapter-removed.fastq
+    r1_filt=${jobd}/seqs.r1.adapter-removed.fastq.gz
 
     for i in $(seq 1 ${n})
     do