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18 Open 4 Closed
18 Open 4 Closed
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Issues list

(WIP) Installation guide for Debian / Ubuntu users
#71 opened Jun 4, 2017 by qiyunzhu
(WIP) Re-organize the codebase
#68 opened May 27, 2017 by qiyunzhu
Mac's readlink compatibility
#64 opened Mar 10, 2017 by qiyunzhu
1
Add GenBank output for simulated HGTs
#38 opened Sep 19, 2016 by ekopylova
Conda recipe for PhyloNet
#33 opened Sep 7, 2016 by ekopylova
Conda recipe for MUSCLE
#28 opened May 30, 2016 by ekopylova
Conda recipe for KALIGN
#27 opened May 30, 2016 by ekopylova
Conda recipe for Jane4
#26 opened May 30, 2016 by ekopylova
Conda recipe for Ranger-DTL
#25 opened May 30, 2016 by ekopylova
Merge putative HGTs into summary
#24 opened May 26, 2016 by ekopylova
parse HGTs from DarkHorse output
#23 opened May 26, 2016 by ekopylova
add compositional tools
#20 opened Feb 2, 2016 by ekopylova
script for preprocessing species & gene trees + BLAST alignments
#16 opened Sep 19, 2015 by ekopylova
function to parse gene losses, duplications and donor/recipient info
#15 opened Sep 19, 2015 by ekopylova
launch_software.sh readlink & mkdir
#13 opened Sep 17, 2015 by ekopylova
travis install of dependency software
#9 opened Sep 16, 2015 by ekopylova
create env variables for PhyloNet & Jane 4 java jar files
#8 opened Sep 16, 2015 by ekopylova
distance method code optimizations
#3 opened Sep 14, 2015 by ekopylova
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